Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J12
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy pro...    27   5.5  
AF101315-4|AAO25988.1|  719|Caenorhabditis elegans Hypothetical ...    27   5.5  
AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical ...    27   5.5  

>AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy
           protein 9 protein.
          Length = 947

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 279 LIFRILFLSIYYWINSIISHFQIASKQ*NLKPF 181
           +IF IL  +I YWI  +I H Q   K   ++ F
Sbjct: 220 MIFAIL-AAIVYWITRVIKHAQYIMKMSEIQQF 251


>AF101315-4|AAO25988.1|  719|Caenorhabditis elegans Hypothetical
           protein T22H9.2b protein.
          Length = 719

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 279 LIFRILFLSIYYWINSIISHFQIASKQ*NLKPF 181
           +IF IL  +I YWI  +I H Q   K   ++ F
Sbjct: 220 MIFAIL-AAIVYWITRVIKHAQYIMKMSEIQQF 251


>AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical
           protein T22H9.2a protein.
          Length = 880

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 279 LIFRILFLSIYYWINSIISHFQIASKQ*NLKPF 181
           +IF IL  +I YWI  +I H Q   K   ++ F
Sbjct: 220 MIFAIL-AAIVYWITRVIKHAQYIMKMSEIQQF 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,624,013
Number of Sequences: 27780
Number of extensions: 43898
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)