Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J05
         (368 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P34834 Cluster: ATP synthase a chain; n=182; Protostomi...    44   0.001
UniRef50_Q9ME79 Cluster: ATP synthase protein 8; n=16; Ditrysia|...    41   0.006
UniRef50_Q53E88 Cluster: ATP synthase A chain; n=12; Arthropoda|...    35   0.41 
UniRef50_P00850 Cluster: ATP synthase a chain; n=75; Panarthropo...    35   0.54 
UniRef50_A0CKA3 Cluster: Chromosome undetermined scaffold_2, who...    32   2.9  

>UniRef50_P34834 Cluster: ATP synthase a chain; n=182;
           Protostomia|Rep: ATP synthase a chain - Anopheles
           gambiae (African malaria mosquito)
          Length = 226

 Score = 43.6 bits (98), Expect = 0.001
 Identities = 23/61 (37%), Positives = 29/61 (47%)
 Frame = +3

Query: 159 MITNLFSIFDPSTXXXXXXXXXXXXXXXXXXXPYRF*LIPNRHFII*NFISKKLHNXFKN 338
           M+TNLFS+FDPST                   P  + L+PNR  +I N I   LH  FK 
Sbjct: 1   MMTNLFSVFDPSTTILNLSLNWLSTFLGLFLIPVSYWLMPNRFQVIWNNILLTLHKEFKT 60

Query: 339 I 341
           +
Sbjct: 61  L 61


>UniRef50_Q9ME79 Cluster: ATP synthase protein 8; n=16;
           Ditrysia|Rep: ATP synthase protein 8 - Bombyx mori (Silk
           moth)
          Length = 53

 Score = 41.1 bits (92), Expect = 0.006
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +1

Query: 100 KKIHLINKFNQKKKLTFN*K 159
           KK+HLINKFNQKKKLTFN K
Sbjct: 33  KKMHLINKFNQKKKLTFNWK 52


>UniRef50_Q53E88 Cluster: ATP synthase A chain; n=12;
           Arthropoda|Rep: ATP synthase A chain - Eriocheir
           sinensis (Chinese mitten crab)
          Length = 224

 Score = 35.1 bits (77), Expect = 0.41
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 159 MITNLFSIFDPSTXXXXXXXXXXXXXXXXXXXPYRF*LIPNRHFII*NFISKKLHNXFK 335
           M+TNLFSIF+PS+                   PY +   P+R  ++   I   LH  FK
Sbjct: 1   MMTNLFSIFEPSSSIFNLSMNWISTILGLMFLPYMYWASPSRWSLLWGKIISTLHKEFK 59


>UniRef50_P00850 Cluster: ATP synthase a chain; n=75;
           Panarthropoda|Rep: ATP synthase a chain - Drosophila
           melanogaster (Fruit fly)
          Length = 224

 Score = 34.7 bits (76), Expect = 0.54
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +3

Query: 159 MITNLFSIFDPSTXXXXXXXXXXXXXXXXXXXPYRF*LIPNRHFII*NFISKKLHNXFKN 338
           M+TNLFS+FDPS                    P  + L+P+R+ I+ N I   LH  FK 
Sbjct: 1   MMTNLFSVFDPS-AIFNFSLNWLSTFLGLLMIPSIYWLMPSRYNIMWNSILLTLHKEFKT 59

Query: 339 I 341
           +
Sbjct: 60  L 60


>UniRef50_A0CKA3 Cluster: Chromosome undetermined scaffold_2, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_2,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 429

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -2

Query: 343 VMFLXSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVXIQFIGKFIKFVD-GSKIENKF 167
           V+    +C FF  ++   K +  I  N+Y  +N   +  +QF GKF +F+D G K  ++F
Sbjct: 116 VLLTIIVCLFFYFEYFTEKEQPQIEANIY--SNKTWVDFLQFCGKF-QFIDNGLKARHQF 172

Query: 166 VIIFN*KLIFFFG 128
              F  K++ + G
Sbjct: 173 ETYFKDKIVSWKG 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,653,709
Number of Sequences: 1657284
Number of extensions: 2910107
Number of successful extensions: 4928
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4925
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)