Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J04
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006673-4|AAF39930.1|  512|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z46787-1|CAA86739.2|  360|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    28   5.8  
AF045646-11|AAK29829.1|  205|Caenorhabditis elegans Hypothetical...    27   7.7  

>AC006673-4|AAF39930.1|  512|Caenorhabditis elegans Hypothetical
           protein K09D9.12 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 176 VNIVTANNFKPKIPEYKMYDCTAGS---LRLMDTILYV 72
           + +VT NN   K  E+K+  CTA S   LRL   + YV
Sbjct: 420 LRVVTGNNQSMKSVEFKLRTCTAVSSRCLRLQKKVAYV 457


>Z46787-1|CAA86739.2|  360|Caenorhabditis elegans Hypothetical
           protein C16C10.1 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 399 SSCVHSKQQSCPG--SLRCCCKIECPKHPKHWNVLEIVQVSASHSFNVGVIVLHLALCAL 226
           S C   K  +C G  S  C   +EC K  K  +V  + QVSAS S   G IV  L +  L
Sbjct: 3   SPCESGKTTNCSGAPSSSCAKSVECCK--KQLSVGVLQQVSASSS---GAIVTSLFMTPL 57

Query: 225 RVLFI 211
            V+ I
Sbjct: 58  DVVKI 62


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 281 RLTRSTSGSSYFTLPFVRFASSSFANTFLA*RTLPVNIVTANNFKPKIPEYKMYD 117
           R  RS++G++     F+R     F   +      P+++ T  + K KIPEY  YD
Sbjct: 54  RKHRSSAGNNSVFESFLRLPPRRFEPEYYEQVKEPIDVTTIQH-KLKIPEYLTYD 107


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 281 RLTRSTSGSSYFTLPFVRFASSSFANTFLA*RTLPVNIVTANNFKPKIPEYKMYD 117
           R  RS++G++     F+R     F   +      P+++ T  + K KIPEY  YD
Sbjct: 54  RKHRSSAGNNSVFESFLRLPPRRFEPEYYEQVKEPIDVTTIQH-KLKIPEYLTYD 107


>AF045646-11|AAK29829.1|  205|Caenorhabditis elegans Hypothetical
           protein F56B3.6 protein.
          Length = 205

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 516 FYNCFVAIYLVCFDCEIIL*WVK*FFY 596
           ++ CF  +YLV F  E IL W   F+Y
Sbjct: 134 YWTCFAVLYLVDFFSEAILSWFP-FYY 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,772
Number of Sequences: 27780
Number of extensions: 319222
Number of successful extensions: 960
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)