Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J01
         (331 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   0.83 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   0.83 
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    23   0.83 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   0.83 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   5.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   7.7  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 174 HHXTSIPLDFYSHSWN*IITTMSASXKESWAAAIDLLTNDEC 299
           HH  +    F + +   ++ + S++   + AAA+D  T+  C
Sbjct: 10  HHHQAAAAAFGAAASGSMVPSFSSTASSALAAAVDAATDKSC 51


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 174 HHXTSIPLDFYSHSWN*IITTMSASXKESWAAAIDLLTNDEC 299
           HH  +    F + +   ++ + S++   + AAA+D  T+  C
Sbjct: 69  HHHQAAAAAFGAAASGSMVPSFSSTASSALAAAVDAATDKSC 110


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 174 HHXTSIPLDFYSHSWN*IITTMSASXKESWAAAIDLLTNDEC 299
           HH  +    F + +   ++ + S++   + AAA+D  T+  C
Sbjct: 10  HHHQAAAAAFGAAASGSMVPSFSSTASSALAAAVDAATDKSC 51


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 174 HHXTSIPLDFYSHSWN*IITTMSASXKESWAAAIDLLTNDEC 299
           HH  +    F + +   ++ + S++   + AAA+D  T+  C
Sbjct: 69  HHHQAAAAAFGAAASGSMVPSFSSTASSALAAAVDAATDKSC 110


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/24 (29%), Positives = 10/24 (41%)
 Frame = +3

Query: 228 ITTMSASXKESWAAAIDLLTNDEC 299
           I       KE W  A+  +  D+C
Sbjct: 87  INAFQCICKEGWEGALCNINTDDC 110


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 218 ELNHYNNECESXGVMGCGHRF 280
           ELN+   E E  GV+   H+F
Sbjct: 639 ELNYTTTEKELLGVIFALHKF 659


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,020
Number of Sequences: 336
Number of extensions: 1581
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6367260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)