Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J01
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   1.7  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   2.2  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    25   3.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    24   5.2  

>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +2

Query: 32  FXCNFAITMGF*YLIVCTPACAFTHN-IKMLAKMAPS-QDKLVHLHKTPTSLXINPSGLL 205
           F C   I++ F   I    A A  H  I  L  + P  +D   H  K      I+P  LL
Sbjct: 310 FVCPSCISLDFDLQI---QAFARQHRVISTLGVVYPEREDSCFHKIKAAQWHQISPRSLL 366

Query: 206 FAFVELNHYNNE 241
           F F E NH +++
Sbjct: 367 FQFQEQNHIHHK 378


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 143 DKLVHLHKTPTSLXINPSGLLFAFVELNH 229
           D + H  K  +S   NPS LLF    L H
Sbjct: 59  DGIPHSRKKVSSAHFNPSTLLFLLKRLGH 87


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 159 FTKHQHHXTSIPLDFYSHSW 218
           F    HH  SIP+DF    W
Sbjct: 114 FVGSVHHVNSIPIDFSPELW 133


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 49  DHDGFLVSNRLHTSVCLHAQYKNACQNGALTGQVSPSSQNTNI 177
           D  GF V +    +  L +Q+     NG+L+  +  S  N+ I
Sbjct: 35  DFSGFNVLSNSSANTDLSSQFFEQTNNGSLSSLIDTSYSNSQI 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,821
Number of Sequences: 5004
Number of extensions: 23530
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)