Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J01
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0179 + 18161696-18163361,18163552-18163664                       29   0.67 
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609...    27   3.6  
08_01_0307 - 2604863-2604931,2605177-2606136                           26   6.2  
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    26   8.3  

>03_04_0179 + 18161696-18163361,18163552-18163664
          Length = 592

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 145 QVSPSSQNTNIIXHQSLWTFIRIRGTK-SLQQ*VRVXRSHGLRPSICSLTMSASCCSKLE 321
           QV  S    +I+   S+ +  R  G +  + +  R+ RSHGL    CSL+   S C   E
Sbjct: 193 QVFWSMNGHDIVSWNSVMSVYRDDGQRRQVFECFRMIRSHGLFFDECSLSTVLSACIDAE 252

Query: 322 DS 327
           DS
Sbjct: 253 DS 254


>01_05_0106 +
           18160018-18160243,18160423-18160470,18160816-18160974,
           18162056-18162219,18162778-18162885,18163695-18163865,
           18163945-18164478,18164574-18164648,18164724-18164852,
           18164975-18165049,18165129-18165338,18165529-18165681,
           18165763-18165986,18166305-18166422,18166518-18166656,
           18166745-18166946,18166981-18167149,18167190-18167267,
           18167268-18167408,18167717-18167819,18169024-18169324,
           18169450-18169518,18169602-18169626,18170946-18170975
          Length = 1216

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 95  AFTHNIKMLAKMAPSQDKLVHLHKTPTSLXINPSG 199
           A THN+ +L  + P+ DK   + +    L  +PSG
Sbjct: 613 AATHNLTLLLPLFPNLDKYYKVEELMFQLVCDPSG 647


>08_01_0307 - 2604863-2604931,2605177-2606136
          Length = 342

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 89  ACAFTHNIKMLAKMAPSQDKLVHLHKTP 172
           AC F H +  ++   P++D+LV +H  P
Sbjct: 202 ACPFDHPVITMSLSPPAKDELVLMHGWP 229


>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 146 KLVHLHKTPTSLXINPSG-LLFAFVELNHYNN 238
           ++VHL K  +S   N +    F+  ELNHYNN
Sbjct: 524 RIVHLSKYKSSPYDNYTRHQTFSAAELNHYNN 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,497,547
Number of Sequences: 37544
Number of extensions: 154367
Number of successful extensions: 262
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)