Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J01
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine rec...    29   1.0  
U80446-5|AAK73881.1|  152|Caenorhabditis elegans Brother (drosop...    27   2.4  
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    27   3.2  
Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    27   4.2  

>U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine
           receptor, class v protein33 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 20  YFLFFXCNFAITMGF*-YLIVCTPACAFTHNIKMLAKM 130
           YFL+  C   I +    Y ++C P   FT+ I+  +K+
Sbjct: 103 YFLYIRCTGIIFLSLQRYFVICCPMLQFTYKIQNASKL 140


>U80446-5|AAK73881.1|  152|Caenorhabditis elegans Brother
           (drosophila tx factor partner)homolog protein 1 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 215 RMRIKVQRD*CXMMLVFCEDGLTCPVRAPFWQ 120
           R R+ V+RD   M L FC+ G+  PV+  + Q
Sbjct: 43  RFRVHVERD--EMPLTFCKTGINIPVKLEWSQ 72


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 20  YFLFFXCNFAITMGF*-YLIVCTPACAFTHNIKMLAKM 130
           YFL+  C   I +    YLI+  P    TH ++  +K+
Sbjct: 99  YFLYIRCTGIIFLSLQRYLIITAPTSRITHKVQNASKL 136


>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 164 KTPTSLXINPSGLLFAFVELNHYNNEC 244
           KTP  L      +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,356,362
Number of Sequences: 27780
Number of extensions: 137277
Number of successful extensions: 279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)