Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_I24
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 115 5e-27
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 110 1e-25
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 106 2e-24
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 39 5e-04
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 37 0.002
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 36 0.004
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 31 0.10
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.6
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 27 1.6
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 2.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 2.9
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 3.8
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 3.8
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.8
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 5.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.8
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 115 bits (276), Expect = 5e-27
Identities = 55/112 (49%), Positives = 76/112 (67%)
Frame = +1
Query: 82 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 261
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 262 KLSSMPVGGGXXXXXXXXXXXXXXXEEXKXDXKXXXKEXSESDDDMGFGLFD 417
KL+++P GG E K KE ESD+DMGFGLFD
Sbjct: 61 KLATVPTGGAASAAPAAAAGGAAPAAEEA--AKEEAKEEEESDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 110 bits (265), Expect = 1e-25
Identities = 53/112 (47%), Positives = 76/112 (67%)
Frame = +1
Query: 82 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 261
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 262 KLSSMPVGGGXXXXXXXXXXXXXXXEEXKXDXKXXXKEXSESDDDMGFGLFD 417
KL+++P GG E K KE ESD+DMGFGLFD
Sbjct: 61 KLATVPSGGAAAAAAPAAAGGAAPAAEEA--AKEEAKEEEESDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 106 bits (255), Expect = 2e-24
Identities = 52/112 (46%), Positives = 75/112 (66%)
Frame = +1
Query: 82 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 261
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 262 KLSSMPVGGGXXXXXXXXXXXXXXXEEXKXDXKXXXKEXSESDDDMGFGLFD 417
KLS++P G + + E ESD+DMGFGLFD
Sbjct: 61 KLSTVPSAGAVATPAAGGAAGAEATSAAEEAKEEEAAE--ESDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 38.7 bits (86), Expect = 5e-04
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +1
Query: 217 LNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXXXXXEEXKXDXKXXXKEXSESDDD 396
L GKD+++L+ + PV GG E + K KE ESD+D
Sbjct: 50 LEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADG-------EAPAEEKEEAKEEEESDED 102
Query: 397 MGFGLFD 417
MGFGLFD
Sbjct: 103 MGFGLFD 109
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 36.7 bits (81), Expect = 0.002
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 217 LNGKDVEQLIA-AGREKLSSMPVGGGXXXXXXXXXXXXXXXEEXKXDXKXXXKEXSESDD 393
L GKD+++L+ G +S P G E + + K KE ESD+
Sbjct: 50 LEGKDLKELLLNIGSAGAASAPTAAGAGAAAPA--------EAAEEEKKEEAKEEEESDE 101
Query: 394 DMGFGLFD 417
DMGFGLFD
Sbjct: 102 DMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 35.9 bits (79), Expect = 0.004
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = +1
Query: 217 LNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXXXXXEEXKXDXKXXXKEXSESDDD 396
L GKD+++L+ ++ P GG E+ K KE ESD+D
Sbjct: 50 LEGKDLKELLL-NIGSAAAAPAAGGAGAPAAAAGGEAAAEEQ-----KEEAKEEEESDED 103
Query: 397 MGFGLFD 417
MGFGLFD
Sbjct: 104 MGFGLFD 110
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 31.1 bits (67), Expect = 0.10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 370 KEXSESDDDMGFGLFD 417
+E ESD+DMGFGLFD
Sbjct: 297 EEEEESDEDMGFGLFD 312
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -3
Query: 218 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 90
SSV T LS S S+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -3
Query: 266 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYA 96
SF+ PA+ S TSL SS S S S + + + S+S+A+ P S++S +A
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSSSSSHA 122
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.6
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -3
Query: 290 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 123
PPP SFS I+ ++ +P SS T + SP S+ +P+ + I S S ++ VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245
Query: 122 PPS 114
P S
Sbjct: 246 PTS 248
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 233 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKY 99
+ L + S T +S S S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 79 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQ 240
K+R + + L ++T + E+ + G+E+ G+K K ++ E NGK +++
Sbjct: 1323 KVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDK 1377
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 233 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 90
T LP ++V T SFS SAS T +++ +V PPST+ T
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 248 AISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 105
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 3.8
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +2
Query: 77 KKCVTWPRIYWLCWV 121
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 77 KKCVTWPRIYWLCWVARPRQLPLTLRRSSAPSVSKLTVRSLRK*SLSST 223
KK + + +I W WV R +P S PS S L SLS++
Sbjct: 161 KKGIQFEKIGWGRWVLRDSTIPANSHPQSLPSNSIPKTEPLDTPSLSNS 209
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 266 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 108
SF P+A + S P+SS+ +F + S +++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 416 TKLYKSTRRWSLFQFMF 466
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 284 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSPSASIPTELRIFSTSAAAGVVLPPS 114
PT S+ +++ S+S P SS +T S S S+ T STS++ S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261
Query: 113 TASKYAAT 90
TAS +++
Sbjct: 262 TASSSSSS 269
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 8.8
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = -3
Query: 287 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVV 126
PPTG S S P + STS+P+ T + + S+ +PT STS
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234
Query: 125 LPPSTAS 105
+P +S
Sbjct: 235 IPTGGSS 241
Score = 24.6 bits (51), Expect = 8.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 254 PAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 90
P + STS+P+ T + + S+ +PT STS +PP+ S T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,304
Number of Sequences: 5004
Number of extensions: 25123
Number of successful extensions: 108
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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