Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_I23
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 31 0.14
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 27 2.3
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 27 3.1
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 5.4
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ... 25 7.2
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 7.2
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 25 7.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 9.5
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 25 9.5
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 25 9.5
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 31.1 bits (67), Expect = 0.14
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = +1
Query: 13 HVFITRHTPRLWFCLLIKILYPNISMSSLIIVLFVFALAVYKLLXRKTVRWVKTNKYGGV 192
HVF+T + L + Y I++S +I + + AL T+ W K NKYG +
Sbjct: 399 HVFVTIFAVCMG-ALAVLFNYIGITISWIITFIGI-ALGPAVFGITLTLFWKKMNKYGMI 456
Query: 193 ETAILRTAPGPVCWPIIGSLH 255
+ + G VCW +GS +
Sbjct: 457 IGCPMGSITGVVCW--VGSCY 475
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 118 FALAVYKLLXRKTVRWVKTNKYGGVET 198
FALA Y L R T+R ++T++ G + T
Sbjct: 185 FALAFYNLPFRSTIRDLRTDRIGRLTT 211
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 16 VFITRHTPRLWFCLLIKILYPNISMSSLIIVLFVFALAVYKLLXRKTVRW 165
VFIT T +W L + Y N + I V+FVF + + W
Sbjct: 251 VFITMDTSDIWLALSKCLNYVNTVIVYPIFVIFVFVWIYMRHYLNFKIMW 300
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 196 TAILRTAPGPVCWPIIGSLHLLGGHESPFQAFTELSKKYGD 318
T++ A G C + S LL H+SP F +SK GD
Sbjct: 244 TSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGD 284
>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 210 DRTGARLLAHYRESTPSGRP 269
D AR +AH +ESTP +P
Sbjct: 235 DEKIARFIAHLKESTPDKKP 254
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 376 IREVLNQNGNVVAGRPD-FLRFHKLFAGDRNN 468
+RE+ +Q + AGRPD LRF +G +N+
Sbjct: 70 LRELFDQRRLLEAGRPDGVLRFRPKKSGPKND 101
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 178 KYGGVETAILRTAPGPVCWPIIGSLHLLGGHE 273
KY GV L G WP+ + L+GGHE
Sbjct: 41 KYTGVCHTDLHALQGD--WPLPAKMPLIGGHE 70
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 136 KLLXRKTVRWVKTNKYGG 189
KL K V W KTN++GG
Sbjct: 290 KLHWPKNVEWWKTNEFGG 307
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 46 WFCLLIKILYPNISMSSL 99
W C +K+LYP IS L
Sbjct: 37 WICKELKLLYPEISKHGL 54
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 235 PIIGSLHLLGGHESPFQAFTELSKKYGDIFS 327
P +GS G P+ F E KYGD+F+
Sbjct: 41 PFVGSAVAYG--MDPYVFFRECRAKYGDVFT 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,018
Number of Sequences: 5004
Number of extensions: 46249
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -