Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_I23
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.36 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 151 KTVRWVKTNKYGGVETAILR 210
           KTV W+K  K  G+E A+LR
Sbjct: 337 KTVSWLKDGKPLGLEEAVLR 356


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
 Frame = -3

Query: 464 FRSPAKSLWKRRKSGRPATTLPF*FKTSLIRDKLLTTTQSALPNLTLKMSPYFFDSSVK- 288
           FRS   SL   ++SGRP        K  +  D+  TT + A     L +S    ++ +K 
Sbjct: 50  FRSGDFSLKDEKRSGRPVEVDDDLIKAIIDSDRHSTTREIA---EKLHVSHTCIENHLKQ 106

Query: 287 ---AWKGDSWPPRRCRLPIMGQQTGPGAVLRMAVSTPPYL 177
                K D+W P   +   + Q+     +L+      P+L
Sbjct: 107 LGYVQKLDTWVPHELKEKHLTQRINSCDLLKKRNENDPFL 146


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 646 CWRPICWSI 620
           CW  ICW+I
Sbjct: 489 CWWKICWTI 497


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 646 CWRPICWSI 620
           CW  ICW+I
Sbjct: 542 CWWKICWTI 550


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 16 VFITRHTPRLWF 51
          +F+T H P  WF
Sbjct: 20 IFVTSHRPAWWF 31


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 528 PPRQVPPAQLKIG 490
           PPRQ PP++ + G
Sbjct: 395 PPRQTPPSRKESG 407


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 246 PDNGPANGPRCGP*NGRLDSAIF 178
           P   PA+ P C   NG   SA F
Sbjct: 885 PSYKPASTPGCSSKNGEPTSAAF 907


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,257
Number of Sequences: 438
Number of extensions: 3631
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)