Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_I18
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 66 4e-12
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 28 1.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.8
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 27 3.1
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 26 4.1
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 26 4.1
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 5.5
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 25 7.2
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.5
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.5
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 9.5
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.5
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 66.1 bits (154), Expect = 4e-12
Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Frame = +2
Query: 110 PHTMLTLRKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSSKF 286
P + K ND+ + + G L ++T + +GV F ++ NQ++ G + G L + F
Sbjct: 3 PPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLETSF 60
Query: 287 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDT 466
K GLT ++ W T N L + + + ++ A GL + + TF+P T KT L +
Sbjct: 61 NDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQHPL 120
Query: 467 VAVNTNLD 490
+ + +++
Sbjct: 121 IHTHASVN 128
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 198 PRASLVLNSP-AGS--PPTRKAERFLAAFPPNLQ 290
P L + P AGS P T+KA +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 389 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 493
V++E P+ T +G+++T+F DT+ + L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 200 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 349
+S SG S + S + V +L S +K + LTF +W + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 26.2 bits (55), Expect = 4.1
Identities = 32/167 (19%), Positives = 69/167 (41%)
Frame = +2
Query: 5 LVVGSAKIGRARQLCVEFSAEIIPTL*IYKTQTWLPHTMLTLRKKANDVFSKGYHFGVFK 184
L+V + K+ + A++ T Y T+ + HT++ + + + G + G F+
Sbjct: 20 LLVSNGKVQVKKSALYPVMAKLART---YATKNYPAHTVINM-PALSPTMTTG-NIGAFQ 74
Query: 185 LDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQ 364
+ K E G T + F + K T T+ LA + +
Sbjct: 75 KKIGDKIEPGDVLCEIETDKAQID--FEQQDEGYLAKILIETGTKDVPVGKPLAVTVENE 132
Query: 365 DKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAG 505
+AA T+E + A + K+G+ K++ +++ + T+ +++G
Sbjct: 133 GDVAAMADFTIEDSSAKEPSAKSGEEKSAPSSEKQSKETSSPSNVSG 179
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 4.1
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 2/123 (1%)
Frame = +2
Query: 191 LKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 370
L ++ + SG + + V + + + G ++DN I +
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232
Query: 371 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPXXXXXXXLNYQX 544
A L G PQ T F+ ++ T+LD +L P L
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDLNLDLGLDD 292
Query: 545 LAG 553
L G
Sbjct: 293 LLG 295
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 247 LVGGDPAGEFNTRLALGLQVEFENTKVIALAEDIIG--LLSQGQHSMGEPC 101
L GG G+F++ L G++ ++ T+ AE +IG L+++ G+ C
Sbjct: 72 LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTGPAGKIC 122
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 599 LGELCFLCIKLGVYTSQPXXGSLVLLQRXQLDR 501
+G+L F+ IK G TS P + V+ + +LDR
Sbjct: 9 IGQLKFIEIKKGTDTSNPESEAPVIQKFGELDR 41
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 338 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 436
T+A D++ ++ A VTLEGT +TG TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 224 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 349
T+G + +G V G LS + + F EK++ + LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 65 EIIPTL*IYKTQTWLPHTMLTLRKKA 142
EI+P KT +WLP+ L L K+
Sbjct: 1145 EILPGSFSLKTPSWLPNLTLNLESKS 1170
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 90 IKHRHGSPILC*PCERRPMMSSARAITLVFSNST*RPRASLVLNSPAGSPPT 245
+K + G+PILC C + ++S + + + NS P LN P + P+
Sbjct: 399 LKSKSGTPILCFRCHKSALVSQS-ILACDYCNSYWHPDC---LNPPLATLPS 446
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 154 EDIIGLLSQGQHSMGEPCLCFINSQSWYYFS 62
+DI+ L+S QHS+ P L ++ Q Y FS
Sbjct: 359 KDILSLISVWQHSVWRPSLAYL--QVVYSFS 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,591
Number of Sequences: 5004
Number of extensions: 49535
Number of successful extensions: 129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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