Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_I13
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 314 1e-86
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 314 1e-86
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 314 1e-86
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 39 7e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 31 0.19
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 27 2.4
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 9.5
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 25 9.5
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 314 bits (770), Expect = 1e-86
Identities = 142/203 (69%), Positives = 170/203 (83%)
Frame = +3
Query: 45 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 224
MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 225 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKXTLEVGNVMPVGAMPEGTIVCNLEEKM 404
V FR+PY ++T E F+A EG+YTGQFVYCGK L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 405 GDXGRLARASGNFATVIGHNPDAXRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 584
GD G L R+SGN+ ++GH+ D +T VKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 585 KAGRAYHKYKVKRNCWPYVRGVA 653
KAGRA+HKY+VKRNCWP RGVA
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVA 202
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 314 bits (770), Expect = 1e-86
Identities = 142/203 (69%), Positives = 170/203 (83%)
Frame = +3
Query: 45 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 224
MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 225 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKXTLEVGNVMPVGAMPEGTIVCNLEEKM 404
V FR+PY ++T E F+A EG+YTGQFVYCGK L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 405 GDXGRLARASGNFATVIGHNPDAXRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 584
GD G L R+SGN+ ++GH+ D +T VKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 585 KAGRAYHKYKVKRNCWPYVRGVA 653
KAGRA+HKY+VKRNCWP RGVA
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVA 202
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 314 bits (770), Expect = 1e-86
Identities = 142/203 (69%), Positives = 170/203 (83%)
Frame = +3
Query: 45 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 224
MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 225 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKXTLEVGNVMPVGAMPEGTIVCNLEEKM 404
V FR+PY ++T E F+A EG+YTGQFVYCGK L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 405 GDXGRLARASGNFATVIGHNPDAXRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 584
GD G L R+SGN+ ++GH+ D +T VKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 585 KAGRAYHKYKVKRNCWPYVRGVA 653
KAGRA+HKY+VKRNCWP RGVA
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVA 202
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 38.7 bits (86), Expect = 7e-04
Identities = 23/90 (25%), Positives = 46/90 (51%)
Frame = +3
Query: 330 LEVGNVMPVGAMPEGTIVCNLEEKMGDXGRLARASGNFATVIGHNPDAXRTXVKLPSGAK 509
L+ GN P+ +P GT++ + +L R++G+ A +I D V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 510 KVLPSSNRGMVGIVAGGGRIDKPILKAGRA 599
+ + ++ +G+V+ + + KAGR+
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS 249
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 556 PATIPTMPLLLDGRTFLAPDGSFTXVRLASGLCPITVAKFPEARARRPXSPIFSSRL 386
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 567 IDKPILKAGRAYHKYKVKRNCWPYVRG 647
++KPI K+K K +CW +RG
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRG 94
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -1
Query: 362 SSNRHHISNFKSXFLSTINKLACVEPFGSNEELLPCLELVWIAEVYNSQ-RCTSTRVMDY 186
SSN ++N S FLS + + P +L C++ WI N +V D
Sbjct: 590 SSNLAFLTNMSSNFLSVLLNVFSSTPSQYRYPILKCIQ-TWIFISSNDTIHSVYKKVTDL 648
Query: 185 ILNNSLDVSMTFSV 144
+ ++ D++ +F++
Sbjct: 649 LPDSLNDLAGSFNI 662
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 344 ISNFKSXFLSTINKLACVEPFGSNEELLPCL 252
ISNF + +L + K+A V+P EL P L
Sbjct: 165 ISNFNNEYLDRVLKIAKVKPTIHQMELHPYL 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,777
Number of Sequences: 5004
Number of extensions: 56818
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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