Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_I10
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 32 0.063
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.44
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 29 0.44
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 28 1.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.8
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 27 2.4
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo... 25 7.2
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 7.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.5
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 32.3 bits (70), Expect = 0.063
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 392 TRVTARLSSFALMSASILPKRSLLRLSTTNY-WSTPNTRRNLIRNLCTENTTGEFLLPKG 568
T+V++R+ +F L S++ ++ Y +T +R LI+ LCT T FL+P
Sbjct: 439 TQVSSRVDNFLLKLPSMVSLELTNEMALEFYDLNTKASRNRLIKALCTIPRTSSFLVPYY 498
Query: 569 TNPEAIKSSLSRD 607
I S LS +
Sbjct: 499 VRLARILSQLSSE 511
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +1
Query: 367 SLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNR 546
+L SP + D T+K ++ + T ++ + DN L H K E T +EY+
Sbjct: 333 NLRSPKSSGKADNLTIKSSSNIDKVTSNDLYL---DNNLQSHFKVTESQPTNLGRKEYSN 389
Query: 547 GVFVAQGNK 573
F + K
Sbjct: 390 SPFSIRARK 398
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 592 RLNGLRICSLGQQKLPCCILCTQISYQISPRVWRGP 485
++NGL I L +PC I + + +S R W+ P
Sbjct: 161 KMNGLLIAYLETWHIPCPIFKAEDLFNLSVRTWKNP 196
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 160 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 249
G F+ +D+E IRE +AE++KMEE+ K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.8
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Frame = +2
Query: 251 SDQNS*TEKATISSRAQLARRHLHSIVTADSLP-SQVTGIA*TRRSFKTRVTARLSSFAL 427
S NS T AT +S L+ + + +A S P S V T S T +T+ ++S
Sbjct: 426 SSANSTT--ATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS-STPLTS-VNSTTA 481
Query: 428 MSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGEFLLPKGTNPEAIKSS-LSR 604
SAS P S+ S T+ STP T N + +T + ++ S+ LS
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSS 541
Query: 605 DGVLTGGSAIAT 640
T SA +T
Sbjct: 542 ANSTTATSASST 553
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 609 PSRDSEDLMASGFVPLGNKNSPVV 538
PS S+D+ + G +P+G N+P++
Sbjct: 68 PSVASQDVKSDGTLPIGTNNNPLI 91
>SPBC16E9.15 |||heat shock factor binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 75
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 160 GDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 282
GDF + +FS E + ++EE M E MN++S+
Sbjct: 31 GDFETLQKQFSEKLETMSTRLDQLEESM----REAMNKKSS 67
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 364 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 480
+S+ SP + EG +LK R + TP+ + T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 141 KYPHQAWRFFGYRY 182
+YP AW+FF RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 9.5
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +2
Query: 413 SSFALMSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGEFLLPKGTNPEAIKS 592
SS + S+S+L + + STT STP T +++ N T T+ L + P S
Sbjct: 3188 SSTPITSSSVLNSSTPITSSTTLNTSTPITSSSVL-NSSTAITSSSVL--NSSTPITSSS 3244
Query: 593 SLSRDGVLTGGSAIATT 643
L+ +T + + T+
Sbjct: 3245 VLNSSTPITSSTVVNTS 3261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,420
Number of Sequences: 5004
Number of extensions: 51491
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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