Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_I09
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26791| Best HMM Match : DUF1674 (HMM E-Value=6.3e-20)               56   3e-08
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.9  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            30   1.9  
SB_51677| Best HMM Match : DUF327 (HMM E-Value=0.89)                   29   2.6  

>SB_26791| Best HMM Match : DUF1674 (HMM E-Value=6.3e-20)
          Length = 112

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +1

Query: 166 IEKENESVKKPESKRLSEFRKKLRETTSITDLGEQTSNSKE-DALXXXXXXXXXXXGEVG 342
           I++ + ++ +  S+  S+     + + + TD        KE D             GE  
Sbjct: 31  IQRGSVTLSQQFSRSFSDKTHNAKSSDAKTDGESSVEEEKEPDPFAPFPDDVNPETGERN 90

Query: 343 GPKGPEPTRYGDWERKGRVSDF 408
           GP+GPEPTRYGDWERKGR  DF
Sbjct: 91  GPRGPEPTRYGDWERKGRCIDF 112


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +1

Query: 73  LWNAIRKLRNKALKLNNARICLSHYYSQQPPIEKENESVKKPESKRLSEFRKK 231
           L N  RKL     +L N  + L + Y Q+  IEKE + +   E +RLS+  KK
Sbjct: 305 LSNNERKLAETENQLQNKNLELEYEYEQKAKIEKERDKL-VIEVERLSDEMKK 356



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +1

Query: 88  RKLRNKAL-KLNNAR----ICLSHYYSQQPPIEKENESVKKPESKRLSEFRKKLRETTSI 252
           R+++N +L K+N +R      L +   +Q  I KENE   K + K + + +KK+ E +  
Sbjct: 595 RQIQNLSLEKVNESRDDEITELENELEEQREIIKENEEKLKEKEKEIEKLKKKIIELSDK 654

Query: 253 TDLGEQTSNSKEDAL 297
               E + N  E  L
Sbjct: 655 LKDMETSRNKVETKL 669


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +1

Query: 169 EKENESVKKPESKRLSEFRKKLRETTSITDLGEQTSNSK 285
           E E+E+ ++P++   S+ R+K+R+  +   LGE+T  ++
Sbjct: 699 ESEDENEEEPDTPSKSKGRRKIRKLLTDEKLGEETKKAR 737


>SB_51677| Best HMM Match : DUF327 (HMM E-Value=0.89)
          Length = 655

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 415 EFRNQILFLFFPNHHIWLVQALWDHQLHQCW 323
           E RN I+F      H+ LV  L+D Q++QC+
Sbjct: 348 EQRNGIVFYEDDKRHLKLVGKLYDQQIYQCY 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,519
Number of Sequences: 59808
Number of extensions: 313451
Number of successful extensions: 801
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)