Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_I08
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 166 1e-41
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 129 2e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 6e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 57 1e-08
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 44 1e-04
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 40 0.002
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.088
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 33 0.15
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 31 0.62
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 30 1.4
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.9
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 3.3
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 3.3
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 29 4.4
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 28 7.6
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 166 bits (404), Expect = 1e-41
Identities = 71/157 (45%), Positives = 110/157 (70%)
Frame = +1
Query: 154 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 333
Y G +DKRT+ K+E+EA E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 334 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQL 513
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 514 IVGVNKMDSTEPPYSEPRFEEIXXEVSSYIKKIGYNP 624
++ VNKMD ++E R+EEI +++ ++KK+G+NP
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 129 bits (311), Expect = 2e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +1
Query: 214 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQ 393
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (266), Expect = 6e-25
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +1
Query: 286 IDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQ 465
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFE G GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 466 TREHALLAFTLGVKQLIVGVNKMD 537
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
M KEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLI 28
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +1
Query: 154 YKCGGIDKRTIXKFEKEAXEM 216
YKCGGIDKRTI KFEKE+ E+
Sbjct: 29 YKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +1
Query: 199 KEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMI 378
+EA + K D ++ ER+RGI++ ++ F + I+D PGH+DF ++
Sbjct: 38 QEAGAVKSNKIKKGATSDFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTF 97
Query: 379 TGTSQADCAVLIVAAGTG 432
+ D ++++ G
Sbjct: 98 RTLTAVDSVIVVIDVAKG 115
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/117 (24%), Positives = 51/117 (43%)
Frame = +1
Query: 253 KLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 432
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 433 EFEXGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXXEVSSYI 603
QT EH + +K +++ NK+D + ++ ++++I V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.088
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +1
Query: 328 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVK 507
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 508 QLIVGVNKMD 537
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/87 (27%), Positives = 35/87 (40%)
Frame = +1
Query: 277 GITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISK 456
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 457 NGQTREHALLAFTLGVKQLIVGVNKMD 537
QT+E A GV +I +NK+D
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKID 201
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 31.5 bits (68), Expect = 0.62
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Frame = -2
Query: 602 MYEDTS---XLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 450
+Y+D S L+S N L ++E IL TPT + + K C + P
Sbjct: 796 LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855
Query: 449 IPXSNSPVPAAT 414
+ NSP+P+ T
Sbjct: 856 VTNGNSPIPSGT 867
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Frame = +1
Query: 250 DKLKAERERGITIDIALWKFETXK-------------YYVTIIDAPGHRDFIKNMITGTS 390
DK +ERGIT+D+ F+ +T++D PGH IK +I G
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122
Query: 391 QADCAVLIVAAGTGEFEXGISKNGQTR 471
A +I GT E G ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 334 IIDAPGHRDFIKNMITGTSQADCAVLIV 417
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = -1
Query: 372 VLDEISVSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFXGLLLE 193
V I ++ + N V + + D TT+T S YPS+ + +F
Sbjct: 316 VASSIQLNITSNTTVEVNDTLRTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSV 375
Query: 192 LXDGTFVNTTTFVES 148
+ D T N TT V S
Sbjct: 376 VFDSTTPNATTLVPS 390
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 279 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVES 148
TT+T S YPS+ + +F + D T N TT V+S
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQS 591
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -1
Query: 372 VLDEISVSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFXGLLLE 193
V I ++ + N V + +++ TT+T S YPS+ + + +F
Sbjct: 4 VASSIQLNITSNTTMAVNDTLRTTSTSVVFPTTITPSPNITSYPSLMKSAVGNFTSATSV 63
Query: 192 LXDGTFVNTTTFVESS 145
+ D T N T V SS
Sbjct: 64 VVDSTTPNATRLVPSS 79
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = -1
Query: 378 DHVLDEISVSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFXGLL 199
+ V I +S + N V + + ++ TT+T S YPS+ + +F
Sbjct: 605 ESVASSIQLSITSNTTMAVNDTLKTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAT 664
Query: 198 LELXDGTFVNTTTFVESS 145
+ D T N T V SS
Sbjct: 665 SVVVDSTTPNATRLVPSS 682
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 244 VLDKLKAERERGITI 288
VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
M K+ N+ VI HVD GKST T L+
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLV 39
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 322 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 432
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 279 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVES 148
TT+T S YPS+ + +F + D T N TT V S
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPS 279
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 279 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVES 148
TT+T S YPS+ + +F + D T N TT V S
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPS 480
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 279 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVES 148
TT+T S YPS+ + +F + D T N TT V S
Sbjct: 18 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPS 61
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 279 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVES 148
TT+T S YPS+ + +F + D T N TT V S
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPS 463
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,487,276
Number of Sequences: 59808
Number of extensions: 348065
Number of successful extensions: 740
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -