Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_I08
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 312 1e-85
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 312 1e-85
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 241 4e-64
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 184 4e-64
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 179 2e-45
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 179 2e-45
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 172 2e-43
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 88 6e-18
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 88 6e-18
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 83 2e-16
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 83 2e-16
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 83 2e-16
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 78 6e-15
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 43 2e-04
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 40 0.001
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 40 0.002
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 38 0.006
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 38 0.008
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 33 0.18
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 33 0.23
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 32 0.31
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 32 0.31
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 32 0.31
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 29 2.2
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 28 5.0
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 28 5.0
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 28 5.0
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.7
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 27 8.8
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 27 8.8
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 312 bits (767), Expect = 1e-85
Identities = 148/167 (88%), Positives = 152/167 (91%)
Frame = +1
Query: 154 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 333
YKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYY+T
Sbjct: 29 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYIT 88
Query: 334 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQL 513
IIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFE GISKNGQTREHALLA TLGVKQL
Sbjct: 89 IIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL 148
Query: 514 IVGVNKMDSTEPPYSEPRFEEIXXEVSSYIKKIGYNPXAVAFVPISG 654
IV NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG
Sbjct: 149 IVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISG 195
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
MGKEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLI 28
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 312 bits (767), Expect = 1e-85
Identities = 148/167 (88%), Positives = 152/167 (91%)
Frame = +1
Query: 154 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 333
YKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYY+T
Sbjct: 29 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYIT 88
Query: 334 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQL 513
IIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFE GISKNGQTREHALLA TLGVKQL
Sbjct: 89 IIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL 148
Query: 514 IVGVNKMDSTEPPYSEPRFEEIXXEVSSYIKKIGYNPXAVAFVPISG 654
IV NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG
Sbjct: 149 IVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISG 195
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
MGKEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLI 28
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 241 bits (589), Expect = 4e-64
Identities = 118/142 (83%), Positives = 122/142 (85%)
Frame = +1
Query: 154 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 333
YKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYY+T
Sbjct: 29 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYIT 88
Query: 334 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQL 513
IIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFE GISKNGQTREHALLA TLGVKQL
Sbjct: 89 IIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL 148
Query: 514 IVGVNKMDSTEPPYSEPRFEEI 579
V+ T P S R + I
Sbjct: 149 ---VSLRSPTRSPDSSRRSDTI 167
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
MGKEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLI 28
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 184 bits (448), Expect(2) = 4e-64
Identities = 84/89 (94%), Positives = 86/89 (96%)
Frame = +1
Query: 154 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 333
YKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYY+T
Sbjct: 29 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYIT 88
Query: 334 IIDAPGHRDFIKNMITGTSQADCAVLIVA 420
IIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 89 IIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 78.6 bits (185), Expect(2) = 4e-64
Identities = 36/48 (75%), Positives = 39/48 (81%)
Frame = +1
Query: 511 LIVGVNKMDSTEPPYSEPRFEEIXXEVSSYIKKIGYNPXAVAFVPISG 654
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISG 161
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
MGKEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLI 28
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 179 bits (435), Expect = 2e-45
Identities = 88/163 (53%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
Frame = +1
Query: 169 IDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAP 348
+D RTI KF+ EA GK SF YAWVLD+ + ERERG+T+DI FET + ++DAP
Sbjct: 197 VDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAP 256
Query: 349 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQLIVGVN 528
GH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VN
Sbjct: 257 GHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVN 316
Query: 529 KMDSTEPPYSEPRFEEIXXEVSSYI-KKIGYNPXAVAFVPISG 654
K+D+ + +S+ RF+EI +S ++ ++ G++ FVP+SG
Sbjct: 317 KLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKP--KFVPVSG 355
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 78 EKTHINIVVIGHVDSGKSTTTGHLI 152
+K IN++V+GHVD+GKST GHL+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLL 191
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 179 bits (435), Expect = 2e-45
Identities = 88/163 (53%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
Frame = +1
Query: 169 IDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAP 348
+D RTI KF+ EA GK SF YAWVLD+ + ERERG+T+DI FET + ++DAP
Sbjct: 215 VDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAP 274
Query: 349 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQLIVGVN 528
GH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VN
Sbjct: 275 GHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVN 334
Query: 529 KMDSTEPPYSEPRFEEIXXEVSSYI-KKIGYNPXAVAFVPISG 654
K+D+ + +S+ RF+EI +S ++ ++ G++ FVP+SG
Sbjct: 335 KLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKP--KFVPVSG 373
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 78 EKTHINIVVIGHVDSGKSTTTGHLI 152
+K IN++V+GHVD+GKST GHL+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLL 209
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 172 bits (419), Expect = 2e-43
Identities = 77/165 (46%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Frame = +1
Query: 163 GGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIID 342
G +DKRT+ K+E+EA E G+ S+ +W +D ERE+G T+++ FET K + TI+D
Sbjct: 134 GMVDKRTLEKYEREAKEKGRESWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILD 193
Query: 343 APGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQLIVG 522
APGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK L++
Sbjct: 194 APGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVIL 253
Query: 523 VNKMDSTEPPYSEPRFEEIXXEVSSYIKKIGYNPXA-VAFVPISG 654
VNKMD + E RF+EI +++ +++K+G+NP + +VP SG
Sbjct: 254 VNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSG 298
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 72 GKEKTHINIVVIGHVDSGKSTTTGHLI 152
G K HIN+V +GHVD+GKST G L+
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLM 130
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 87.8 bits (208), Expect = 6e-18
Identities = 52/132 (39%), Positives = 73/132 (55%)
Frame = +1
Query: 247 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 426
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 427 TGEFEXGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXXEVSSYIK 606
G E QT+EH +LA +GVK + + +NK D E E + + E +
Sbjct: 143 DGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLS 191
Query: 607 KIGYNPXAVAFV 642
G+N A +
Sbjct: 192 LHGFNGDATPVI 203
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 81 KTHINIVVIGHVDSGKSTTT 140
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 87.8 bits (208), Expect = 6e-18
Identities = 52/132 (39%), Positives = 73/132 (55%)
Frame = +1
Query: 247 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 426
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 427 TGEFEXGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXXEVSSYIK 606
G E QT+EH +LA +GVK + + +NK D E E + + E +
Sbjct: 143 DGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLS 191
Query: 607 KIGYNPXAVAFV 642
G+N A +
Sbjct: 192 LHGFNGDATPVI 203
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 81 KTHINIVVIGHVDSGKSTTT 140
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 83.0 bits (196), Expect = 2e-16
Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Frame = +1
Query: 247 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 426
+D E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 146
Query: 427 TGEFEXGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIXXEVSSY 600
G QTREH LLA +GV ++V +NK+D E P +E R E + ++
Sbjct: 147 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQ 196
Query: 601 IKKIGY 618
+ + GY
Sbjct: 197 LNEFGY 202
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 75 KEKTHINIVVIGHVDSGKSTTT 140
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 83.0 bits (196), Expect = 2e-16
Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Frame = +1
Query: 247 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 426
+D E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 427 TGEFEXGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIXXEVSSY 600
G QTREH LLA +GV ++V +NK+D E P +E R E + ++
Sbjct: 148 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQ 197
Query: 601 IKKIGY 618
+ + GY
Sbjct: 198 LNEFGY 203
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 75 KEKTHINIVVIGHVDSGKSTTT 140
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 83.0 bits (196), Expect = 2e-16
Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Frame = +1
Query: 247 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 426
+D E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 427 TGEFEXGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIXXEVSSY 600
G QTREH LLA +GV ++V +NK+D E P +E R E + ++
Sbjct: 148 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQ 197
Query: 601 IKKIGY 618
+ + GY
Sbjct: 198 LNEFGY 203
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 75 KEKTHINIVVIGHVDSGKSTTT 140
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 77.8 bits (183), Expect = 6e-15
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = +1
Query: 154 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAER 270
YKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLK +
Sbjct: 29 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKVTK 67
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
MGKEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLI 28
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/98 (35%), Positives = 49/98 (50%)
Frame = +1
Query: 244 VLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 423
+LDKL+ ERERGIT+ Y + +ID PGH DF + + D +L+VAA
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAA 135
Query: 424 GTGEFEXGISKNGQTREHALLAFTLGVKQLIVGVNKMD 537
G QT + LAF + Q+I +NK+D
Sbjct: 136 NQG-------VQAQTIANFWLAFEKNI-QIIPVINKID 165
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 43.2 bits (97), Expect = 2e-04
Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Frame = +1
Query: 217 GKGSFKYAWVLDKLKAERERGITIDIALWKFETXK-YYVTIIDAPGHRDFIKNMITGTSQ 393
GK + A ++ A GIT I + E K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 394 ADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQLIVGVNKMD 537
AD VL+VAA G E QT + A V QL+V VNK+D
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKID 267
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 40.3 bits (90), Expect = 0.001
Identities = 32/97 (32%), Positives = 43/97 (44%)
Frame = +1
Query: 247 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 426
+D + ER+RGITI A + + IID PGH DF + D AVL++ G
Sbjct: 87 MDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CG 145
Query: 427 TGEFEXGISKNGQTREHALLAFTLGVKQLIVGVNKMD 537
G G+ T L + + I VNKMD
Sbjct: 146 VG----GVQSQTFTVNRQLARYNV---PFICFVNKMD 175
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +1
Query: 244 VLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 423
V D L ERERGIT+ A + + + +ID PGH DF + D V+++
Sbjct: 64 VTDFLDIERERGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDG 123
Query: 424 GTG 432
G
Sbjct: 124 SAG 126
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLI 152
NI VI HVD+GK+T T L+
Sbjct: 27 NIGVIAHVDAGKTTVTERLL 46
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/96 (28%), Positives = 47/96 (48%)
Frame = +1
Query: 328 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVK 507
+ +ID PGH I+ ++ ++ D A++I+ + GI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 508 QLIVGVNKMDSTEPPYSEPRFEEIXXEVSSYIKKIG 615
++I+ +NK D E + + E +V +K +G
Sbjct: 127 RVIIVLNKCDLAE----KSKISESAKKVRKGLKSMG 158
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 90 INIVVIGHVDSGKSTTT 140
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +1
Query: 325 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGV 504
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 505 KQLIVGVNKMDSTEPPYSEPRFEEI 579
L++ NK+D + + +E+I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 247 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 417
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 247 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 417
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 32.7 bits (71), Expect = 0.23
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +1
Query: 334 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQL 513
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 514 IVGVNKMDSTEPPYSEPR 567
++ +NK+D S PR
Sbjct: 605 VIALNKIDRLYEYESNPR 622
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +1
Query: 250 DKLKAERERGITI-----DIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 414
D L E++RG +I I + Y + IID PGH +F M AD V++
Sbjct: 172 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 231
Query: 415 VAAGTG 432
V A G
Sbjct: 232 VDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +1
Query: 250 DKLKAERERGITI-----DIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 414
D L E++RG +I I + Y + IID PGH +F M AD V++
Sbjct: 47 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 106
Query: 415 VAAGTG 432
V A G
Sbjct: 107 VDAHEG 112
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -2
Query: 530 LFTPTMSCLTPRVKASKACSRV*PFLEIPXSNSPVPAATMSTA 402
LF PT+SC+ + AS S P + P +N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAP-ANDDVPEATLSVS 54
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 283 TIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 432
T+++ K + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
M +++ N+ VI HVD GKST T L+
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLV 40
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
M +++ N+ VI HVD GKST T L+
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLV 40
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 283 TIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 432
T+++ K + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 90 INIVVIGHVDSGKSTTT 140
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 172 DKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 273
+KR + EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 172 DKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 273
+KR + EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.0
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -1
Query: 513 ELFDTEGESEQGMLTGLTVLRDTXFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 355
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 354 VSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSI 235
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 328 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 423
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 63 PKMGKEKTHINIVVIGHVDSGKSTTTGHL 149
P K+ + V+G+VD+GKST G L
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVL 160
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 63 PKMGKEKTHINIVVIGHVDSGKSTTTGHL 149
P K+ + V+G+VD+GKST G L
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVL 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,790
Number of Sequences: 27780
Number of extensions: 254182
Number of successful extensions: 675
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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