Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_I08
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   332   2e-93
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   322   2e-90
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   274   4e-76
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   241   3e-66
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    35   8e-04
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  332 bits (816), Expect = 2e-93
 Identities = 159/167 (95%), Positives = 159/167 (95%)
 Frame = +1

Query: 154 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 333
           YKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT
Sbjct: 29  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 88

Query: 334 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQL 513
           IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE GISKNGQTREHALLAFTLGVKQL
Sbjct: 89  IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 148

Query: 514 IVGVNKMDSTEPPYSEPRFEEIXXEVSSYIKKIGYNPXAVAFVPISG 654
           IVGVNKMDSTEPPYSE RFEEI  EVSSYIKKIGYNP AVAFVPISG
Sbjct: 149 IVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 195



 Score = 60.1 bits (139), Expect = 2e-11
 Identities = 27/28 (96%), Positives = 27/28 (96%)
 Frame = +3

Query: 69  MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
           MGKEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLI 28


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  322 bits (791), Expect = 2e-90
 Identities = 154/167 (92%), Positives = 156/167 (93%)
 Frame = +1

Query: 154 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 333
           YKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT
Sbjct: 29  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVT 88

Query: 334 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQL 513
           IIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEFE GISKNGQTREHALLAFTLGVKQL
Sbjct: 89  IIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQL 148

Query: 514 IVGVNKMDSTEPPYSEPRFEEIXXEVSSYIKKIGYNPXAVAFVPISG 654
           IVGVNKMD T+PPYSE RFEEI  EVSSYIKKIGYN  +VAFVPISG
Sbjct: 149 IVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISG 195



 Score = 60.1 bits (139), Expect = 2e-11
 Identities = 27/28 (96%), Positives = 27/28 (96%)
 Frame = +3

Query: 69  MGKEKTHINIVVIGHVDSGKSTTTGHLI 152
           MGKEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLI 28


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  274 bits (673), Expect = 4e-76
 Identities = 132/138 (95%), Positives = 132/138 (95%)
 Frame = +1

Query: 241 WVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 420
           WVLDKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 421 AGTGEFEXGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXXEVSSY 600
           AGTGEFE GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEI  EVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 601 IKKIGYNPXAVAFVPISG 654
           IKKIGYNP AVAFVPISG
Sbjct: 121 IKKIGYNPAAVAFVPISG 138


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  241 bits (591), Expect = 3e-66
 Identities = 116/122 (95%), Positives = 116/122 (95%)
 Frame = +1

Query: 289 DIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQT 468
           DIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE GISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 469 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIXXEVSSYIKKIGYNPXAVAFVPI 648
           REHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEI  EVSSYIKKIGYNP AVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 649 SG 654
           SG
Sbjct: 121 SG 122


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 26/70 (37%), Positives = 33/70 (47%)
 Frame = +1

Query: 328 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVK 507
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 508 QLIVGVNKMD 537
            +IV +NK+D
Sbjct: 247 PIIVAINKID 256



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 81  KTHINIVVIGHVDSGKST 134
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 90  INIVVIGHVDSGKST 134
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 313 TXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 414
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 313 TXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 414
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,934
Number of Sequences: 438
Number of extensions: 3138
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)