Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_I05
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 111 7e-26
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 111 7e-26
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.49
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.65
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 27 2.0
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 2.6
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 26 3.5
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 3.5
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 25 8.0
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 25 8.0
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 111 bits (267), Expect = 7e-26
Identities = 50/109 (45%), Positives = 69/109 (63%)
Frame = +2
Query: 185 LIKKPVAVHSRARVRKNTEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXY 364
+I+KP +HSR R+RK A+ GRH G+GKR+GTA ARMP +W Y
Sbjct: 50 VIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKY 109
Query: 365 RTAXKIDRHLYHSLYMXAXGNVFKNKRVLMEYIHRXXADKAXTNMLSDQ 511
R + KID+HLYH+LY+ A GN FK+KR L+E+I R A+ T ++ +Q
Sbjct: 110 RESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
Score = 87.0 bits (206), Expect = 2e-18
Identities = 36/49 (73%), Positives = 47/49 (95%)
Frame = +1
Query: 37 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGL 183
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGL
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGL 49
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 111 bits (267), Expect = 7e-26
Identities = 50/109 (45%), Positives = 69/109 (63%)
Frame = +2
Query: 185 LIKKPVAVHSRARVRKNTEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXY 364
+I+KP +HSR R+RK A+ GRH G+GKR+GTA ARMP +W Y
Sbjct: 50 VIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKY 109
Query: 365 RTAXKIDRHLYHSLYMXAXGNVFKNKRVLMEYIHRXXADKAXTNMLSDQ 511
R + KID+HLYH+LY+ A GN FK+KR L+E+I R A+ T ++ +Q
Sbjct: 110 RESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
Score = 87.0 bits (206), Expect = 2e-18
Identities = 36/49 (73%), Positives = 47/49 (95%)
Frame = +1
Query: 37 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGL 183
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGL
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGL 49
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.49
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 180 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 91
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.65
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 159 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 64
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 7 LVCVGSH-RVRMSSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 165
+V VG + ++ S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 305 IVLVGKYTHLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 89 VKRRCGWIQMKSMRSQTPTPDRTSVR*SRMVS 184
++R G M S+ S TPTP + VR S +S
Sbjct: 131 MRRDFGMTSMSSITSSTPTPSQLPVRPSTSLS 162
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 234 FLRTRAREWTATGFLMSETILDHLTDVLSGVGVCDLIDFIWIQPH 100
F R ++ + L +TI D + G +C+L +FI + PH
Sbjct: 128 FSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRLCELHNFILLHPH 172
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 19 GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 132
G +++ K K L +S+ W D NE+NE+
Sbjct: 9 GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 8.0
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +1
Query: 19 GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLAHQET 198
G+ R+ S ++ R +M+ K + LD +E A N R + RK++ +
Sbjct: 256 GTARMTTSIMEEWLRWFDDLMKGRKVLLILDKFVAHECALENIRNSERKLVNTTVVFLPV 315
Query: 199 CSSPLPRPCPQK 234
S+ + PC Q+
Sbjct: 316 NSTEIYHPCGQE 327
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 562 FLAALACLLYFIAAGL 515
FL A C+LY I+AGL
Sbjct: 208 FLIASTCILYLISAGL 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,393
Number of Sequences: 5004
Number of extensions: 41805
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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