Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_I05
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 128 2e-30
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 128 2e-30
04_03_0266 + 13648287-13649099,13649186-13649524 31 0.50
08_02_0740 + 20593389-20593521,20593654-20593783,20593888-20594554 30 1.2
05_07_0333 - 29351372-29351665,29351786-29351928,29352374-293524... 29 2.0
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 29 2.0
08_02_0563 - 18728901-18729014,18729094-18729324,18729358-187293... 29 3.5
04_04_1687 - 35365766-35366356,35367137-35368135 29 3.5
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 28 4.7
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 28 4.7
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026 28 6.2
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 27 8.2
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106... 27 8.2
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 128 bits (310), Expect = 2e-30
Identities = 59/109 (54%), Positives = 72/109 (66%)
Frame = +2
Query: 185 LIKKPVAVHSRARVRKNTEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXY 364
+IKKP +HSR+R R+ EA+ KGRH G+GKRRGT AR+P K LW Y
Sbjct: 50 IIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKY 109
Query: 365 RTAXKIDRHLYHSLYMXAXGNVFKNKRVLMEYIHRXXADKAXTNMLSDQ 511
R A KID+H+YH +YM GN+FKNKRVLME IH+ A+KA LSDQ
Sbjct: 110 REAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
Score = 85.0 bits (201), Expect = 4e-17
Identities = 37/48 (77%), Positives = 44/48 (91%)
Frame = +1
Query: 37 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 180
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDG 48
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 128 bits (310), Expect = 2e-30
Identities = 59/109 (54%), Positives = 72/109 (66%)
Frame = +2
Query: 185 LIKKPVAVHSRARVRKNTEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXY 364
+IKKP +HSR+R R+ EA+ KGRH G+GKRRGT AR+P K LW Y
Sbjct: 50 IIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKY 109
Query: 365 RTAXKIDRHLYHSLYMXAXGNVFKNKRVLMEYIHRXXADKAXTNMLSDQ 511
R A KID+H+YH +YM GN+FKNKRVLME IH+ A+KA LSDQ
Sbjct: 110 REAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
Score = 86.2 bits (204), Expect = 2e-17
Identities = 38/48 (79%), Positives = 44/48 (91%)
Frame = +1
Query: 37 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 180
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDG 48
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 91 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLAHQETCSSPLPR 219
K+K+ L +E ++ T R+ RK+ K + ++T S P+P+
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQAIPKKKTSSHPMPK 362
>08_02_0740 + 20593389-20593521,20593654-20593783,20593888-20594554
Length = 309
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 115 NEINEIANTNSRQNIRKMIKDGLAHQETCSSPLPRPCPQKHRGTXKGSS 261
NEI NT+ ++ ++KM D L H+ P P P P+K K ++
Sbjct: 102 NEIKNHWNTHIKKKLKKMGIDPLTHRPL--QPPPSPSPEKKHAERKNTA 148
>05_07_0333 -
29351372-29351665,29351786-29351928,29352374-29352434,
29352950-29353034,29353254-29353292,29353487-29353557,
29353640-29353735,29353869-29354017,29354106-29354175,
29354752-29354792,29354902-29354977
Length = 374
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = +2
Query: 95 RRCGWIQMKSMRSQTPTPDRTSVR*SRMVSLIKKPVAVHSRARVRKNTEARXKGRHCGFG 274
RR GW M +MR Q P P + ++ S I + A +T GR G
Sbjct: 235 RRSGWSDMDAMRRQVPPPAINAGSLAKQKSPIGHEQSTSKDAVFSSST---FLGRSSGSS 291
Query: 275 KRRGTANARMPXKE 316
+R +++R P E
Sbjct: 292 RRPAVSSSREPSTE 305
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 156 VLSGVGVCDLIDFIWIQPHLLFTTSHNRGCKPLLQLEGTHPDTV 25
VL G D D WI PH T +R C +L LEG DT+
Sbjct: 519 VLDQEGWFDTGDIGWIAPHC--PTGPSRKCGGMLVLEGRAKDTI 560
>08_02_0563 -
18728901-18729014,18729094-18729324,18729358-18729376,
18729457-18729627,18731145-18731377
Length = 255
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 106 LDPNEINEIANTNSRQNIRKMIKDGL-AHQE 195
LDP INE N R NI IKD L AHQ+
Sbjct: 94 LDPAVINETTLKNDRANIVGYIKDCLFAHQD 124
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 187 HQETCSSPLPRPCPQKHR 240
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 10 VCVGSHRV---RMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 180
+ V HR+ +SS ++ ++ S R K + NEI+ +N R+ ++
Sbjct: 492 IVVPGHRLVTRSVSSFDNEEHVSLSYSRPDKTLRSTSTSSENEISKSNPREPPETQVEQV 551
Query: 181 LAHQETCSS 207
LA ETCS+
Sbjct: 552 LATNETCSA 560
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +1
Query: 25 HRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGL 183
+RVR L K V R LDP +NE N R N+ IKD L
Sbjct: 530 YRVRAIDTNLLKLTWKHVHRKAPHVALLDPAVVNETTLKNDRANMMGYIKDCL 582
>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
Length = 267
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 115 NEINEIANTNSRQNIRKMIKDGLAHQETCSSPLPRPCPQKHRGT 246
NEI NT+ ++ +RKM D + HQ P PRP P++ T
Sbjct: 102 NEIKNHWNTHIKKKLRKMGIDPVTHQPL--EP-PRPPPREQDAT 142
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 115 NEINEIANTNSRQNIRKMIKDGLAHQETCSSPLPRPCPQKHR 240
NEI NT+ ++ ++KM D + H+ S P P Q+ +
Sbjct: 1789 NEIKNHWNTHIKKKLKKMGLDPVTHRPVMSLAQPDPLKQQQQ 1830
>02_03_0297 -
17408902-17409045,17409134-17409304,17410563-17410664,
17412605-17412718,17413095-17413178,17413669-17413808,
17414429-17414560,17415430-17415618,17415736-17415801,
17415905-17415938
Length = 391
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 557 RGACVPPLLYCGGP 516
+GACV P+ YCG P
Sbjct: 152 KGACVDPVAYCGTP 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,986,795
Number of Sequences: 37544
Number of extensions: 322898
Number of successful extensions: 781
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -