Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_I05
         (579 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   7.2  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    23   9.5  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   9.5  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 20   DLTVSG*VPSSCRRGLQPLLCDVVKR 97
            +LT+   VP+ C  G Q  +C ++K+
Sbjct: 1107 ELTIHRYVPARCGAGCQDRVCILLKK 1132


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 179 PSLIILRMFCLELVF 135
           PSL++ R FC ++V+
Sbjct: 4   PSLLLFRQFCRDIVW 18


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 542 PPLLYCGGPQPGR*ACSXWPCQ 477
           P  L C GP  GR  C    C+
Sbjct: 598 PGGLLCSGPDHGRCVCGQCECR 619


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,899
Number of Sequences: 2352
Number of extensions: 11490
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)