Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_I05
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   127   5e-30

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  127 bits (307), Expect = 5e-30
 Identities = 70/156 (44%), Positives = 89/156 (57%), Gaps = 7/156 (4%)
 Frame = +2

Query: 65  LQPLLCDVVKRRCG----WIQMKSMRSQTPTPDRTSVR*SRMVS---LIKKPVAVHSRAR 223
           LQ  L   V + CG    W+    +   +    R S+R  R+V+   +I+KPV VHSR R
Sbjct: 6   LQKRLASAVLK-CGKHRVWLDPNEVSEISGANSRQSIR--RLVNDGLIIRKPVTVHSRFR 62

Query: 224 VRKNTEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXYRTAXKIDRHLYHS 403
            R+  EAR KGRH G+GKRRGTANARMP K LW             YR A K+D+HLYH 
Sbjct: 63  AREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHE 122

Query: 404 LYMXAXGNVFKNKRVLMEYIHRXXADKAXTNMLSDQ 511
           LY+ A GN FKNK+ L+EYI +   +      L+DQ
Sbjct: 123 LYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 31/49 (63%), Positives = 45/49 (91%)
 Frame = +1

Query: 37  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGL 183
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGL 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,915,616
Number of Sequences: 27780
Number of extensions: 256615
Number of successful extensions: 555
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)