Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_I05
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   3.8  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 33  QDEFPQAAEEACSLCYAMW*KEG 101
           +DEF +  +  CSLC   + ++G
Sbjct: 263 EDEFDEFGDSKCSLCQRRFEEQG 285


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 115 NEINEIANTNSRQNIRKMIKDGLAHQETCSSPLP 216
           N  N   N N   N +K+ K+ + + E    P+P
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVP 132


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 115 NEINEIANTNSRQNIRKMIKDGLAHQETCSSPLP 216
           N  N   N N   N +K+ K+ + + E    P+P
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVP 132


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 559 LAALACLLYFIAAGLSLVAKHVRXGL 482
           L  L+C+L+F+   + +   ++R GL
Sbjct: 205 LYQLSCILFFLIPMVFIAVLYIRIGL 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,087
Number of Sequences: 438
Number of extensions: 3371
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)