Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_I03
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   129   3e-31
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   2.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   2.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.6  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   8.8  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   8.8  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  129 bits (312), Expect = 3e-31
 Identities = 68/160 (42%), Positives = 96/160 (60%)
 Frame = +3

Query: 129 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTD 308
           ++IV A RTP G+FGG F +  AT+L +IA  GAL+   + P+ VD + +G V+S++   
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANL-- 63

Query: 309 GIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQA 488
           G    R  AL AG+P+      +N++C SG ++ +  AQ I+TG A+I VAGG E+MS A
Sbjct: 64  GQNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNA 123

Query: 489 PFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTA 608
           P+     RFG   G     +  L  GLSD+Y GLPMG  A
Sbjct: 124 PYYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAA 163


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 452 DLGCAGQNVLSAVHDRLE-TRAA*SVDAEHRLLLRNTSFERRVTWRVDSVSL 300
           D       +   V + ++ T+ + + ++   LLL N+  + +++W +D+V L
Sbjct: 177 DFNLDDPQIFDVVSEHIDITQTSDAPNSNRNLLLNNSMLQEKISWYLDTVEL 228


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 156 PFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMV 275
           P G  G    + + T+ Q I  +  L    V PAQ+DS++
Sbjct: 270 PSGPMGMKTGSVNDTQSQQITLMNVLASQNVPPAQIDSIM 309


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 399  FQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNVRFGTALGTNYAFEDTL 557
            F S+ ++ Q  L   + ++     EN++   +A   + F   L T Y+FE TL
Sbjct: 1088 FPSLFHAIQATLEKVSNVNGKLNSENVAALRYADDTMSFLVTLQTTYSFELTL 1140


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 416 QRSGHFDRRSQDLSSGGSREHVASALRGQKREVRHGSGHQLRLRRHPLGRTLGLILRTPH 595
           Q   H ++  +    G SR    S L  + + +++GS HQ+   +  L   +G++   PH
Sbjct: 118 QMQVHLEKEEEITKKGFSRFLCNSPLFNEDKGIKYGSYHQMYRFQGRL-VAVGVLDLLPH 176

Query: 596 G 598
           G
Sbjct: 177 G 177


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 79  VNWIGIILNHVCF 117
           +NWI I+L+++C+
Sbjct: 421 INWINILLSYICY 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,226
Number of Sequences: 5004
Number of extensions: 47967
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)