Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_I03
(617 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 24 1.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 1.8
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 4.2
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 4.2
M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee homeobox-... 22 5.5
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 5.5
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 7.3
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.6
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.6
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 9.6
>AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha
protein precursor protein.
Length = 153
Score = 23.8 bits (49), Expect = 1.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 423 ERCSRSIGNQSRIVC*CRAPASLEEYQL*APRDVA 319
E+ R + ++ + C CR S+EEY + P+++A
Sbjct: 99 EKKFRKVITKAPLECMCRPCTSVEEYAI-IPQEIA 132
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.4 bits (48), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 217 AIVCSSVADVLRKTPPKVPNGVLLAPTM 134
A+V SS + ++ PP PNGV+ T+
Sbjct: 1188 ALVMSSESILVSWRPPSQPNGVITQYTV 1215
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 256 LRSTAWSWAKSSLHHKLTESTRHVTRRS 339
LRS + S+ ++S H E +RH R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNS 244
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 256 LRSTAWSWAKSSLHHKLTESTRHVTRRS 339
LRS + S+ ++S H E +RH R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNS 244
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 256 LRSTAWSWAKSSLHHKLTESTRHVTRRS 339
LRS + S+ ++S H E +RH R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNS 244
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 256 LRSTAWSWAKSSLHHKLTESTRHVTRRS 339
LRS + S+ ++S H E +RH R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNS 244
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 256 LRSTAWSWAKSSLHHKLTESTRHVTRRS 339
LRS + S+ ++S H E +RH R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNS 244
>M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H17. ).
Length = 79
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +2
Query: 311 NLHATSRGAQSWYSSREAGARHQQ 382
+LH T + W+ +R A A+ Q
Sbjct: 45 SLHLTETQVKIWFQNRRAKAKRLQ 68
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.8 bits (44), Expect = 5.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 239 GRSVPGSGRQH 271
G S PG+GR+H
Sbjct: 392 GSSTPGTGREH 402
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 256 LRSTAWSWAKSSLHHKLTESTRHVTRRS 339
LRS + S+ ++S H E RH R S
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDLRHEDRNS 244
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 239 GRSVPGSGRQ 268
GR +PG+GRQ
Sbjct: 371 GRQLPGTGRQ 380
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 239 GRSVPGSGRQ 268
GR +PG+GRQ
Sbjct: 371 GRQLPGTGRQ 380
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.0 bits (42), Expect = 9.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 371 EHRLLLRNTSFERRVTWRVDSV 306
E RL +NT+FE ++ + D+V
Sbjct: 457 EKRLTKQNTAFENQLQFVSDAV 478
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,529
Number of Sequences: 438
Number of extensions: 3680
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -