Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H23
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   0.73 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   6.8  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.0  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 120 DLRRNHHLRDLNGPLIHAVSD 182
           D RR+HH +++ G L+H  SD
Sbjct: 451 DHRRSHHQQNITGDLVHVYSD 471


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 320  WLMVIVPLFS-GQEVLWPAPIMGRKFGASDWPQAL 219
            W+ ++  L S  +   W  PI+G  FGA  W Q L
Sbjct: 2233 WIALVALLASLSRYHSWILPILGLGFGAPRWLQTL 2267


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 186 SIDSGSEARILQGLGPVGSPKFTAHYWCRPQHL 284
           S+     +RI +GL P+ +P+F   +  + +HL
Sbjct: 545 SLTPSKTSRIYRGLAPLKNPEFNEDHVKKAEHL 577


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 493 NRDNFTNR*LLLYVLYINPISCKVFFFF 576
           N   F  R LLL++L I   SC V + F
Sbjct: 59  NSSKFRKRFLLLFLLGITGYSCSVVYCF 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,773
Number of Sequences: 5004
Number of extensions: 49194
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)