Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H23
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0236 + 14652034-14652225,14652311-14652527,14652561-146532...    29   3.0  
04_03_1026 - 21806124-21806225,21807017-21807055,21807307-218074...    29   3.0  
12_01_0363 + 2750982-2751479                                           28   5.3  
04_01_0323 - 4302818-4303118,4303198-4303368,4303451-4303674,430...    28   5.3  
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425...    28   5.3  
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139...    28   7.0  
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218...    28   7.0  
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    28   7.0  

>08_02_0236 +
           14652034-14652225,14652311-14652527,14652561-14653208,
           14653374-14654364,14654532-14654703
          Length = 739

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 197 WQRSADSSGLG--ASRKPQIYGPLLVQATAPPVPKTVE 304
           W ++  S GLG  A+RKP++  P L +   PP  K +E
Sbjct: 442 WHKNDISFGLGTDATRKPEVPKPGLGKPPKPPKKKVIE 479


>04_03_1026 -
           21806124-21806225,21807017-21807055,21807307-21807407,
           21807924-21808185,21808334-21808458,21809058-21809637
          Length = 402

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +1

Query: 124 YDAITTFGISMVLSFTLSVIILLIV-----AAKRGFFRAWGQSEAPNLRPII-GAGHSTS 285
           Y+A       ++LSF LSV+ILL V        RG     G+   P LR ++  AGHS  
Sbjct: 56  YEAHPVAVAFILLSFGLSVLILLSVYETRFRMMRGSSGEVGEYPLPELRNLVMVAGHSIY 115

Query: 286 CPENSGTI 309
             E+ G I
Sbjct: 116 TSESCGKI 123


>12_01_0363 + 2750982-2751479
          Length = 165

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 233 SRKPQIYGPLLVQATAPPVPKTVELSPLA 319
           S+K +  GP  V++ + PVP+T  L+P A
Sbjct: 51  SKKKKRAGPAAVRSASRPVPETAPLTPTA 79


>04_01_0323 -
           4302818-4303118,4303198-4303368,4303451-4303674,
           4303720-4303995
          Length = 323

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 424 PDSNAGEVDNYLKVMIFFCRSIFXXY 347
           P S AG+VDN L VM   CR +   Y
Sbjct: 85  PVSKAGKVDNVLAVMGIACRELHKQY 110


>03_01_0575 +
           4247431-4247489,4248475-4248547,4248792-4249229,
           4252122-4253339
          Length = 595

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 91  QTWKTVEMFLTYDAITTFGISMVLSFTLSVIIL 189
           + W+ V    TYD  T      VL+FT+SV I+
Sbjct: 137 ELWRKVWGEATYDLATVLAFLAVLAFTISVYIM 169


>04_04_0909 -
           29312875-29313135,29313235-29313556,29313676-29313923,
           29314032-29314259
          Length = 352

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 236 DWPQALKNPRFAATINRIITDSVNERTIEIP 144
           D  QAL N R+ + ++R+I +S +ER I +P
Sbjct: 263 DQIQALSNDRYKSVLHRVIVNSESER-ISVP 292


>03_06_0003 +
           30921197-30921388,30921514-30921632,30921742-30921811,
           30922078-30922161,30922258-30922344,30922431-30922501,
           30922648-30922702,30923374-30923509,30925009-30925103,
           30925203-30925357,30925435-30925543,30925761-30925817,
           30925913-30926027,30926177-30926264,30926738-30927501,
           30927600-30927688,30928315-30928422,30928550-30928657,
           30928887-30928977,30929235-30929287,30929557-30929712,
           30930763-30930825,30931491-30931535,30932075-30932130,
           30933051-30933132,30933238-30933354,30933428-30933530,
           30933912-30934062,30934180-30934417,30934564-30934764,
           30934850-30934935,30935036-30935135
          Length = 1347

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 187 LLIVAAKRGFFRAWGQSEAPNLRPIIGA 270
           L + A+K G  R W    A  +RPIIGA
Sbjct: 312 LYVTASKDGSLRIWDGISAECVRPIIGA 339


>02_01_0138 +
           999809-999821,1000456-1001341,1001424-1003221,
           1003716-1003805,1004034-1004111,1004513-1004518,
           1004849-1004958,1005174-1005369
          Length = 1058

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 153 NGPLIHAVSDNSIDSGSEARILQGLGPVGSPKFTAHYWCRPQHLLS 290
           NG L  ++ D S+   S +  LQ   P G P       CR QHL S
Sbjct: 622 NGLLPMSLQDLSLSPLSVSENLQSFSPEGLPCLRRLSLCRSQHLKS 667


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,944,091
Number of Sequences: 37544
Number of extensions: 291713
Number of successful extensions: 752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)