Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H23
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28941-8|AAC71105.2| 470|Caenorhabditis elegans Hypothetical pr... 29 3.6
U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly glu... 28 4.8
U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly glu... 28 4.8
U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly glu... 28 4.8
U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly glu... 28 4.8
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 28 4.8
Z82068-2|CAB04898.2| 233|Caenorhabditis elegans Hypothetical pr... 28 6.3
U10414-12|AAA19079.3| 497|Caenorhabditis elegans Nematode astac... 28 6.3
AJ561217-1|CAD99197.1| 210|Caenorhabditis elegans NAS-28 protei... 28 6.3
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical pr... 27 8.3
AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical ... 27 8.3
>U28941-8|AAC71105.2| 470|Caenorhabditis elegans Hypothetical
protein F31D5.2 protein.
Length = 470
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 37 FFYKHACLCYAYLICVIVQTWKTVEMFLTYDAITTFGISMVLSFTLSVIILLIVAA 204
FF+ ACL A ++ +I W V F TY A + + ++ + LL + A
Sbjct: 60 FFFTIACLLIAPVVDLITAKWSMVVGFFTYIAFQLGFLELNSAYLYTTSALLGIGA 115
>U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform d
protein.
Length = 558
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 215 SSGLGASRKPQIYG-PLLVQATAPPVPKTVELSPLATYTA 331
++GL A+ K ++ G P Q AP VPK ++ S T+TA
Sbjct: 103 AAGLKATVKKELTGSPAKKQKPAPAVPKILDFSVGRTFTA 142
>U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform e
protein.
Length = 573
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 215 SSGLGASRKPQIYG-PLLVQATAPPVPKTVELSPLATYTA 331
++GL A+ K ++ G P Q AP VPK ++ S T+TA
Sbjct: 118 AAGLKATVKKELTGSPAKKQKPAPAVPKILDFSVGRTFTA 157
>U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform c
protein.
Length = 670
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 215 SSGLGASRKPQIYG-PLLVQATAPPVPKTVELSPLATYTA 331
++GL A+ K ++ G P Q AP VPK ++ S T+TA
Sbjct: 215 AAGLKATVKKELTGSPAKKQKPAPAVPKILDFSVGRTFTA 254
>U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform g
protein.
Length = 672
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 215 SSGLGASRKPQIYG-PLLVQATAPPVPKTVELSPLATYTA 331
++GL A+ K ++ G P Q AP VPK ++ S T+TA
Sbjct: 217 AAGLKATVKKELTGSPAKKQKPAPAVPKILDFSVGRTFTA 256
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 215 SSGLGASRKPQIYG-PLLVQATAPPVPKTVELSPLATYTA 331
++GL A+ K ++ G P Q AP VPK ++ S T+TA
Sbjct: 1192 AAGLKATVKKELTGSPAKKQKPAPAVPKILDFSVGRTFTA 1231
>Z82068-2|CAB04898.2| 233|Caenorhabditis elegans Hypothetical
protein W04A4.4 protein.
Length = 233
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 168 HAVSDNSIDSGSEARILQGLGPVGSPKFTAHYWCRPQHLLSRKQW 302
++V D + G +L G GP G PK + P + R+ W
Sbjct: 136 YSVLDAQVYMGHRLILLAGSGPFGKPKSVRRWGHLPSYKEIREDW 180
>U10414-12|AAA19079.3| 497|Caenorhabditis elegans Nematode astacin
protease protein28 protein.
Length = 497
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 193 IVAAKRGFFRAWGQSEAPNLRPIIGAGHSTSC 288
I+A + GF + GQ EAP IIG +C
Sbjct: 287 ILAKENGFQNSMGQREAPAFSDIIGVNKLYNC 318
>AJ561217-1|CAD99197.1| 210|Caenorhabditis elegans NAS-28 protein
protein.
Length = 210
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 193 IVAAKRGFFRAWGQSEAPNLRPIIGAGHSTSC 288
I+A + GF + GQ EAP IIG +C
Sbjct: 93 ILAKENGFQNSMGQREAPAFSDIIGVNKLYNC 124
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 197 WQRSADSSGLGASRKPQIYGPLLVQATAPPVPKTVELSP 313
W+ AD+S A+ +P++ P+ VQ +AP P + +P
Sbjct: 41 WEAQADTSP--AAVQPEVAEPVAVQESAPVAPVSATEAP 77
>Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical protein
ZC247.1 protein.
Length = 4404
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 345 PNSSYAVYVANGDSSTVFGTGGAVACTN-NG 256
P + A Y+ NG+SST GA C N NG
Sbjct: 4256 PKTERASYLTNGESSTQTQRNGAANCHNGNG 4286
>Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical protein
ZC247.1 protein.
Length = 4404
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 345 PNSSYAVYVANGDSSTVFGTGGAVACTN-NG 256
P + A Y+ NG+SST GA C N NG
Sbjct: 4256 PKTERASYLTNGESSTQTQRNGAANCHNGNG 4286
>AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical
protein ZC247.1 protein.
Length = 4404
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 345 PNSSYAVYVANGDSSTVFGTGGAVACTN-NG 256
P + A Y+ NG+SST GA C N NG
Sbjct: 4256 PKTERASYLTNGESSTQTQRNGAANCHNGNG 4286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,417,137
Number of Sequences: 27780
Number of extensions: 276091
Number of successful extensions: 700
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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