Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H21
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     54   3e-08
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     54   4e-08
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    52   2e-07
12_02_0604 + 20920609-20922144                                         27   6.7  
04_04_1550 - 34332948-34335986                                         27   6.7  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 29/70 (41%), Positives = 40/70 (57%)
 Frame = +2

Query: 62  MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXFLYTLVITDKEKAEKLKQS 241
           MP++I +IKDFL+    +  +  + K               +LYTL + D +KA KLKQS
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSR-YLYTLCVHDTDKANKLKQS 59

Query: 242 LPPGLQVKEV 271
           LPPGL V+EV
Sbjct: 60  LPPGLTVQEV 69


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 29/70 (41%), Positives = 40/70 (57%)
 Frame = +2

Query: 62  MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXFLYTLVITDKEKAEKLKQS 241
           MP++I +IKDFL+    +  +  + K               +LYTL + D +KA KLKQS
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSK-YLYTLCVFDADKANKLKQS 59

Query: 242 LPPGLQVKEV 271
           LPPGL V+EV
Sbjct: 60  LPPGLTVQEV 69


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 28/69 (40%), Positives = 39/69 (56%)
 Frame = +2

Query: 65  PREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXFLYTLVITDKEKAEKLKQSL 244
           P++I +IKDFL+    +  +  + K               +LYTL + D +KA KLKQSL
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSK-YLYTLCVFDADKANKLKQSL 90

Query: 245 PPGLQVKEV 271
           PPGL V+EV
Sbjct: 91  PPGLTVQEV 99


>12_02_0604 + 20920609-20922144
          Length = 511

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 108 RRKDAKSVKIKKNPAECQVQGFDAQGSCTPWSSLTKRRLRN 230
           R KDA++VK++    E  V     Q SC      TKR L N
Sbjct: 372 REKDAQAVKLRNELKELHVSMSQLQASCDELD--TKRSLLN 410


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 258 WRPGGKLCLSFSAFSLSVMTRVYRNLEHRSLELDILQG 145
           W PG   C S++  S  +   V  +L +RSL  + L+G
Sbjct: 54  WGPGDAACCSWTGVSCDLGRVVALDLSNRSLSRNSLRG 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,862,837
Number of Sequences: 37544
Number of extensions: 107361
Number of successful extensions: 245
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)