Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H21
         (384 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.      70   3e-12
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...    70   3e-12
AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38 p...    59   6e-09
BC014655-1|AAH14655.1|  173|Homo sapiens chromosome 19 open read...    29   6.8  
BC010129-1|AAH10129.1|  173|Homo sapiens chromosome 19 open read...    29   6.8  
BC003639-1|AAH03639.2|  168|Homo sapiens C19orf10 protein protein.     29   6.8  
AL365374-1|CAB96948.1|  170|Homo sapiens R33729_1 hypothetical p...    29   6.8  
AL365373-1|CAB96947.1|  170|Homo sapiens R33729_1 hypothetical p...    29   6.8  
AC005594-1|AAC33800.1|  152|Homo sapiens R33729_1, partial CDS p...    29   6.8  
AC005339-1|AAC27824.1|   99|Homo sapiens R33729_1 protein.             29   6.8  

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 37/71 (52%), Positives = 47/71 (66%)
 Frame = +2

Query: 62  MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXFLYTLVITDKEKAEKLKQS 241
           MPR+I++IKDFL+    +  +  + K+              +LYTLVITDKEKAEKLKQS
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSR-YLYTLVITDKEKAEKLKQS 59

Query: 242 LPPGLQVKEVK 274
           LPPGL VKE+K
Sbjct: 60  LPPGLAVKELK 70


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 37/71 (52%), Positives = 47/71 (66%)
 Frame = +2

Query: 62  MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXFLYTLVITDKEKAEKLKQS 241
           MPR+I++IKDFL+    +  +  + K+              +LYTLVITDKEKAEKLKQS
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSR-YLYTLVITDKEKAEKLKQS 59

Query: 242 LPPGLQVKEVK 274
           LPPGL VKE+K
Sbjct: 60  LPPGLAVKELK 70


>AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38
           protein.
          Length = 37

 Score = 58.8 bits (136), Expect = 6e-09
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +2

Query: 185 FLYTLVITDKEKAEKLKQSLPPGLQVKEVK 274
           +LYTLVITDKEKAEKLKQSLPPGL VKE+K
Sbjct: 8   YLYTLVITDKEKAEKLKQSLPPGLAVKELK 37


>BC014655-1|AAH14655.1|  173|Homo sapiens chromosome 19 open reading
           frame 10 protein.
          Length = 173

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 276 HFTSLTWRPGGKLCLSFSAFSLSV 205
           HFT   WRP GK  L F+ F   V
Sbjct: 89  HFTCTIWRPQGKSYLYFTQFKAEV 112


>BC010129-1|AAH10129.1|  173|Homo sapiens chromosome 19 open reading
           frame 10 protein.
          Length = 173

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 276 HFTSLTWRPGGKLCLSFSAFSLSV 205
           HFT   WRP GK  L F+ F   V
Sbjct: 89  HFTCTIWRPQGKSYLYFTQFKAEV 112


>BC003639-1|AAH03639.2|  168|Homo sapiens C19orf10 protein protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 276 HFTSLTWRPGGKLCLSFSAFSLSV 205
           HFT   WRP GK  L F+ F   V
Sbjct: 84  HFTCTIWRPQGKSYLYFTQFKAEV 107


>AL365374-1|CAB96948.1|  170|Homo sapiens R33729_1 hypothetical
           protein protein.
          Length = 170

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 276 HFTSLTWRPGGKLCLSFSAFSLSV 205
           HFT   WRP GK  L F+ F   V
Sbjct: 86  HFTCTIWRPQGKSYLYFTQFKAEV 109


>AL365373-1|CAB96947.1|  170|Homo sapiens R33729_1 hypothetical
           protein protein.
          Length = 170

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 276 HFTSLTWRPGGKLCLSFSAFSLSV 205
           HFT   WRP GK  L F+ F   V
Sbjct: 86  HFTCTIWRPQGKSYLYFTQFKAEV 109


>AC005594-1|AAC33800.1|  152|Homo sapiens R33729_1, partial CDS
           protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 276 HFTSLTWRPGGKLCLSFSAFSLSV 205
           HFT   WRP GK  L F+ F   V
Sbjct: 94  HFTCTIWRPQGKSYLYFTQFKAEV 117


>AC005339-1|AAC27824.1|   99|Homo sapiens R33729_1 protein.
          Length = 99

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 276 HFTSLTWRPGGKLCLSFSAFSLSV 205
           HFT   WRP GK  L F+ F   V
Sbjct: 15  HFTCTIWRPQGKSYLYFTQFKAEV 38


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,674,731
Number of Sequences: 237096
Number of extensions: 598298
Number of successful extensions: 1352
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)