Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H16
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 151 4e-37
At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 151 4e-37
At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 151 4e-37
At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 151 4e-37
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 52 4e-07
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 49 2e-06
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 37 0.013
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 36 0.031
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 36 0.031
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 31 0.51
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 30 1.2
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 30 1.2
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 30 1.2
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 27 8.2
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 27 8.2
>At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 151 bits (366), Expect = 4e-37
Identities = 71/90 (78%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = +1
Query: 82 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 258
F+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEVP+T
Sbjct: 18 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 77
Query: 259 XXXXXAVNKDKFISKMFLRGDSVILVLRNP 348
VN+D+FISKMFLRGDSVI+VLRNP
Sbjct: 78 KKKALPVNRDRFISKMFLRGDSVIIVLRNP 107
>At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 151 bits (366), Expect = 4e-37
Identities = 71/90 (78%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = +1
Query: 82 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 258
F+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEVP+T
Sbjct: 18 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 77
Query: 259 XXXXXAVNKDKFISKMFLRGDSVILVLRNP 348
VN+D+FISKMFLRGDSVI+VLRNP
Sbjct: 78 KKKALPVNRDRFISKMFLRGDSVIIVLRNP 107
>At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 151 bits (366), Expect = 4e-37
Identities = 71/90 (78%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = +1
Query: 82 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 258
F+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEVP+T
Sbjct: 18 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 77
Query: 259 XXXXXAVNKDKFISKMFLRGDSVILVLRNP 348
VN+D+FISKMFLRGDSVI+VLRNP
Sbjct: 78 KKKALPVNRDRFISKMFLRGDSVIIVLRNP 107
>At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 109
Score = 151 bits (366), Expect = 4e-37
Identities = 71/90 (78%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = +1
Query: 82 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 258
F+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEVP+T
Sbjct: 19 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 78
Query: 259 XXXXXAVNKDKFISKMFLRGDSVILVLRNP 348
VN+D+FISKMFLRGDSVI+VLRNP
Sbjct: 79 KKKALPVNRDRFISKMFLRGDSVIIVLRNP 108
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 51.6 bits (118), Expect = 4e-07
Identities = 31/90 (34%), Positives = 51/90 (56%)
Frame = +1
Query: 94 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 273
PL ++ S+ + ++ + R++++L G++ AFD+H NM+L +V+E T V
Sbjct: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEI 69
Query: 274 AVNKDKFISKMFLRGDSVILVLRNPLATAA 363
+ I +F+RGD VILV PL TAA
Sbjct: 70 VRTTKRTIEFLFVRGDGVILV-SPPLRTAA 98
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/88 (30%), Positives = 50/88 (56%)
Frame = +1
Query: 94 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 273
PL ++ S++ ++ + R++++L G++ AFD+H NM+L +V+E+ T +
Sbjct: 12 PLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEI 69
Query: 274 AVNKDKFISKMFLRGDSVILVLRNPLAT 357
+ + +F+RGD VILV PL T
Sbjct: 70 VRTTKRTVPFLFVRGDGVILV-SPPLRT 96
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +1
Query: 127 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 306
N ++ + ++ ++L+G+ AFDRH N+VL + +E P + + + +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLV 73
Query: 307 FLRGDSVI 330
LRG+ VI
Sbjct: 74 LLRGEEVI 81
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/68 (26%), Positives = 37/68 (54%)
Frame = +1
Query: 127 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 306
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + + +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPAKGKKINEEREDRRTLGLV 72
Query: 307 FLRGDSVI 330
LRG+ VI
Sbjct: 73 LLRGEEVI 80
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/68 (26%), Positives = 37/68 (54%)
Frame = +1
Query: 127 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 306
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + + +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPAKGKKINEEREDRRTLGLV 72
Query: 307 FLRGDSVI 330
LRG+ VI
Sbjct: 73 LLRGEEVI 80
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +1
Query: 130 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 228
+++ + + +K+L+G +K FD + NMVLE+V E
Sbjct: 20 SKIWVIMKGDKELVGILKGFDVYVNMVLEDVTE 52
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 133 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 228
++L+ R+ +KL+G +++FD+ N VLE E
Sbjct: 22 KLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 133 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 228
++L+ R+ +KL+G +++FD+ N VLE E
Sbjct: 22 KLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 133 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 228
++L+ R+ +KL+G +++FD+ N VLE E
Sbjct: 22 KLLVLLRDGRKLMGLLRSFDQFANAVLEEAYE 53
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 88 TGPLSVLTQSVKNNTQVLINCRNNKKLL--GRVKAFDRHCNMVLENVKEM 231
T P++++ + +++ ++ I K L GR+ FD + N+VL+ +E+
Sbjct: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 88 TGPLSVLTQSVKNNTQVLINCRNNKKLL--GRVKAFDRHCNMVLENVKEM 231
T P++++ + +++ ++ I K L GR+ FD + N+VL+ +E+
Sbjct: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,194
Number of Sequences: 28952
Number of extensions: 241970
Number of successful extensions: 509
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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