Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H15
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 231 7e-62
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 66 3e-12
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 55 1e-08
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 46 5e-06
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 45 9e-06
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 41 2e-04
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 29 0.80
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 4.2
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz... 26 4.2
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 7.4
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 25 9.8
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 231 bits (565), Expect = 7e-62
Identities = 103/181 (56%), Positives = 141/181 (77%)
Frame = +2
Query: 122 MSILXYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 301
MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 302 QTVFXRLKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQPY 481
QT++ ++ +NLY+ +E R ++PKTF+ ++S+ LYE+RFGPYF PV+AG+ DN P+
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGV-SNDNTPF 119
Query: 482 VCNMDLIGCPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAADXDAI 661
+C D IGC + E F+VSGT +EQLYGMCE+++EPNL+PD+LF TISQAL+NA D D I
Sbjct: 120 ICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCI 179
Query: 662 S 664
S
Sbjct: 180 S 180
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 66.5 bits (155), Expect = 3e-12
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Frame = +2
Query: 140 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVFX 316
NGG VA+ G +A D R + ++T F P+V ++G L +G G D +
Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70
Query: 317 RLKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGL 457
R++ ++LY R M ++ + M+ LLY +RF PY++ +AG+
Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGI 117
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 54.8 bits (126), Expect = 1e-08
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 2/176 (1%)
Frame = +2
Query: 143 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXRL 322
G + A++ +D V +A D R + A + K+ Q+ ++ G A DTQTV L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 323 KFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQP--YVCNMD 496
K+ +++Y ++ T + + S + Y+ + ++AG YD + V ++
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAG---YDEKTGGDVYSIP 139
Query: 497 LIGCPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAADXDAIS 664
L G ++ + + G+ S +YG C+A + N+ +E + A+ A + D S
Sbjct: 140 LGGSLHK-QPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSS 194
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 46.0 bits (104), Expect = 5e-06
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +2
Query: 143 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXRL 322
G +V+A+K D V IA D + + ++ ++G VG G +D Q + L
Sbjct: 43 GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLL 102
Query: 323 -KFXMNLYELKENRMMRPKTFSAMLSNLLYERR--FGPYFIEPVIAGLXPYDNQPYVCNM 493
K + + ++P LS +LY RR PY+ + ++AG+ + +PYV
Sbjct: 103 EKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFA 162
Query: 494 DLIG 505
DL G
Sbjct: 163 DLRG 166
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 45.2 bits (102), Expect = 9e-06
Identities = 41/175 (23%), Positives = 71/175 (40%)
Frame = +2
Query: 140 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXR 319
+G +A + Q + + D R S KV ++ P L L G A D Q
Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119
Query: 320 LKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQPYVCNMDL 499
L L++L+ ++ S +LSN+ Y + + ++AG Y + D
Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSD- 178
Query: 500 IGCPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAADXDAIS 664
G + + F V G+ S YG+ ++ + +L E +++V A DA S
Sbjct: 179 -GTRLKGDLFSV-GSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYS 231
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 40.7 bits (91), Expect = 2e-04
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 4/159 (2%)
Frame = +2
Query: 143 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXRL 322
G +A++G +C+ I +++ + Q VS NF K+ + + + GL D + + +
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 323 KFXMNLYELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLXPYDNQPYVCN 490
+ ++L + + + ++ + Y + G P+ + +IAG DN P V
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148
Query: 491 MDLIGCPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDE 607
+ G N + + G S+ E W+ L DE
Sbjct: 149 TEPAGIYNAWKATAI-GRASKAAREYLEKNWKEGLSRDE 186
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 28.7 bits (61), Expect = 0.80
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 146 GAVVAMKGQD-CVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 295
GA+ +D VA A D G+ S + +VF++G L VG+ G T
Sbjct: 407 GALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 172 RLCGHRYGQAVWYTSSNSINQLPKSIPNGTHIV 270
RL G Y V Y+S NS+ LPK P+ H+V
Sbjct: 239 RLRGKTYDYKVEYSSINSLFLLPK--PDEQHVV 269
>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 220 NSINQLPKSIPNGTHIVCRPSRS 288
+S+ LP +P+G I C P RS
Sbjct: 84 HSLKDLPSEMPDGMVIACIPKRS 106
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 50 IQYFELITLQ*FQVKKCLSFYITNMSILXYNGGAVVAMKGQDCVAI 187
++YF+ + + +VK SF+I N +L Y V A G D V +
Sbjct: 441 LKYFDQVVVGLKEVKDAFSFFIFNRFVLVY----VPAYNGVDPVTL 482
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/19 (42%), Positives = 17/19 (89%)
Frame = +2
Query: 197 KRFGIQAQTVSTNFPKVFQ 253
+RFG+++ T++++F KVF+
Sbjct: 281 ERFGLKSTTIASSFGKVFR 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,861
Number of Sequences: 5004
Number of extensions: 56645
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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