Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H15
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 227 8e-60
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 216 2e-56
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 58 5e-09
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 58 6e-09
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 40 0.002
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 36 0.029
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 29 2.5
10_08_1019 - 22299800-22299946,22300040-22300109,22300930-223010... 29 4.4
06_03_0023 + 15558890-15559117,15559229-15560134 29 4.4
08_01_0319 + 2848751-2848762,2849516-2850449,2850476-2851234,285... 28 7.7
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 227 bits (554), Expect = 8e-60
Identities = 103/181 (56%), Positives = 140/181 (77%)
Frame = +2
Query: 122 MSILXYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 301
MSI YNG AVVAM G++C AIA+D+R G+Q QTV+T+F +VF++ LY+GL GLATD
Sbjct: 114 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 173
Query: 302 QTVFXRLKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQPY 481
QT++ RL F LY+L+E R M+P+TF++++S LLYE+RFGPYF +PVIAGL DN+P+
Sbjct: 174 QTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGE-DNEPF 232
Query: 482 VCNMDLIGCPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAADXDAI 661
+C MD IG + FVVSGT SE LYG CE++++PN++P+ELF TISQAL ++ D D +
Sbjct: 233 ICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCL 292
Query: 662 S 664
S
Sbjct: 293 S 293
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 216 bits (527), Expect = 2e-56
Identities = 98/182 (53%), Positives = 137/182 (75%)
Frame = +2
Query: 119 NMSILXYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATD 298
++ I YNG AVVAM G++C AIA+D+R G+Q QTV+T+F +VF++ LY+GL GLATD
Sbjct: 9 SLQIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATD 68
Query: 299 TQTVFXRLKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQP 478
QT++ RL F LY+L+E R M+P+ F++++S LLYE+RFGPYF +PVIAGL D +P
Sbjct: 69 AQTLYQRLVFRHKLYQLREERDMKPQAFASLVSALLYEKRFGPYFCQPVIAGLGDND-EP 127
Query: 479 YVCNMDLIGCPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAADXDA 658
++C MD IG + FVVSGT SE LYG CE++++P+++P+ELF TISQAL + D D
Sbjct: 128 FICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPSMEPEELFETISQALQASVDRDC 187
Query: 659 IS 664
+S
Sbjct: 188 LS 189
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/106 (30%), Positives = 48/106 (45%)
Frame = +2
Query: 140 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXR 319
NGG VA+ G D +A D R + +S + K+ + + G D + +
Sbjct: 10 NGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVLASSGFQGDVKALQRN 69
Query: 320 LKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGL 457
L LYE N+ M + +LSN LY +RF PY+ V+ GL
Sbjct: 70 LTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGL 115
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 58.0 bits (134), Expect = 6e-09
Identities = 33/122 (27%), Positives = 56/122 (45%)
Frame = +2
Query: 140 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXR 319
NGG VA+ G D +A D R + ++ + K+ ++ + G D + +
Sbjct: 12 NGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKN 71
Query: 320 LKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQPYVCNMDL 499
L LY+ + N+ M + +LSN LY +RF PY+ V+ GL + + V D
Sbjct: 72 LAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDS-EGKGCVFTYDA 130
Query: 500 IG 505
+G
Sbjct: 131 VG 132
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/155 (19%), Positives = 66/155 (42%)
Frame = +2
Query: 143 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXRL 322
G +V + V +A D R + K+ Q+ +YV G A DTQ + +
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYV 84
Query: 323 KFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQPYVCNMDLI 502
++ ++ + ++ + K + ++ L Y+ + ++ G Y+ + ++ L
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNK-NMLQAGMIVGGWDKYEG-GQIFSVPLG 142
Query: 503 GCPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDE 607
G + F + G+ S LYG+ + W+ + +E
Sbjct: 143 GTILR-QPFAIGGSGSSYLYGLLDHEWKEGMSQEE 176
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 35.9 bits (79), Expect = 0.029
Identities = 23/89 (25%), Positives = 35/89 (39%)
Frame = +2
Query: 143 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXRL 322
G +V + QD V + D R N K+ M P +Y G A DT+ V +
Sbjct: 38 GTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 97
Query: 323 KFXMNLYELKENRMMRPKTFSAMLSNLLY 409
+ L+ R R T +L + L+
Sbjct: 98 SSQLQLHRYATGRESRVVTSLTLLKSHLF 126
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 145 GCGSRHEGPRLCGHRYGQAVW 207
GCG R + PRL G Q VW
Sbjct: 159 GCGPRRDAPRLVGRAVRQEVW 179
>10_08_1019 -
22299800-22299946,22300040-22300109,22300930-22301066,
22301142-22301195,22301638-22301694,22301814-22301846,
22301942-22302067,22302162-22302815,22303042-22303166,
22303770-22303935
Length = 522
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = -1
Query: 629 PVRLXQRVHLASSWAPRELHTYHTAVQNRCPIPQNXQVHLGNQSSPCYRH 480
P+R + A++ A + +H +HT +++ QV G+ S+ H
Sbjct: 197 PLREREEAAAAAAAAAKRIHDHHTPAESKAEAASEPQVSAGDHSTQSSDH 246
>06_03_0023 + 15558890-15559117,15559229-15560134
Length = 377
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 186 MATQSWPFMATTAPPLYXSIDILVI 112
++T +WPF+A A L S+D +++
Sbjct: 4 LSTAAWPFLAAVAAALLCSVDAVIV 28
>08_01_0319 +
2848751-2848762,2849516-2850449,2850476-2851234,
2851793-2851850,2851900-2852179
Length = 680
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 180 WPSLRTSGLVYKLKQYQPTSQKYSKWDPHCM*AFPVSRLTPKLY 311
W LRT+ + ++ TSQKYS+W P C P P LY
Sbjct: 589 WMDLRTTKGIIRVVA-GGTSQKYSQWLPACHLDSP-REFQPNLY 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,063,615
Number of Sequences: 37544
Number of extensions: 361483
Number of successful extensions: 740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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