Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H15
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                  281   3e-76
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         74   9e-14
SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)             32   0.37 
SB_15403| Best HMM Match : CH (HMM E-Value=0)                          28   7.9  

>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score =  281 bits (690), Expect = 3e-76
 Identities = 125/181 (69%), Positives = 154/181 (85%)
 Frame = +2

Query: 122 MSILXYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 301
           MSI+ YNG A++AM G++CVAIA D+R GIQAQTVS +F K+FQMG  L+VGLPGLATD 
Sbjct: 71  MSIMEYNGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDV 130

Query: 302 QTVFXRLKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQPY 481
           QT+  RLKF +NLYEL+E R ++PKTF +M+SNLLYERRFGPYF+EPVIAGL P  N+P+
Sbjct: 131 QTISSRLKFRLNLYELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIAGLDPKTNEPF 190

Query: 482 VCNMDLIGCPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAADXDAI 661
           + +MDLIGCP E + FVVSGTCSEQ+YGMCE+LW P+L+PD+LF TISQAL+NA D DA+
Sbjct: 191 ISSMDLIGCPMETKDFVVSGTCSEQMYGMCESLWVPDLEPDDLFETISQALLNAVDRDAV 250

Query: 662 S 664
           S
Sbjct: 251 S 251


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 45/148 (30%), Positives = 73/148 (49%)
 Frame = +2

Query: 116 TNMSILXYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 295
           T  S   +NGG V+A+ G+D   IA+D R     Q  + + PKV+++  +  +G  G   
Sbjct: 78  TYFSPYAFNGGTVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHG 137

Query: 296 DTQTVFXRLKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQ 475
           D  T+   +   + +YE    + M     + MLS +LY RRF PY+   ++AGL   + +
Sbjct: 138 DCLTLTKHISARLQMYEHDHGKAMSCTAIAQMLSTMLYYRRFFPYYTYNILAGLDS-EGK 196

Query: 476 PYVCNMDLIGCPNEPEXFVVSGTCSEQL 559
             V + D +G   E E +   G+ S  L
Sbjct: 197 GCVFSFDPVG-SYEREVYRAGGSASALL 223


>SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)
          Length = 131

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 506 CPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAADXDAIS 664
           C  +P  F + G+ S  +YG C+A ++  +  +E F  +  A+  A   D  S
Sbjct: 51  CIRQP--FTIGGSGSTYIYGHCDATYKSGMSKEECFNFVKTAVALAMSRDGSS 101


>SB_15403| Best HMM Match : CH (HMM E-Value=0)
          Length = 1907

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 190  YGQAVWYTSSNSINQLPKSIPNGTHIVCRPSRSRD*HPNCI 312
            YGQ VWY    +  +  ++ P    +VC  S  RD    C+
Sbjct: 1547 YGQCVWYYDGRTQCECRRTCPRSDQLVC-GSDDRDYANECV 1586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,211,776
Number of Sequences: 59808
Number of extensions: 451936
Number of successful extensions: 878
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)