Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H15
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 192 3e-49
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 45 4e-05
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 42 4e-04
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 42 4e-04
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 33 0.14
U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical pr... 31 0.97
U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF016451-1|AAB66002.2| 294|Caenorhabditis elegans Serpentine re... 28 5.2
Z70211-1|CAA94157.2| 299|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical ... 27 9.1
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 192 bits (467), Expect = 3e-49
Identities = 88/181 (48%), Positives = 120/181 (66%)
Frame = +2
Query: 122 MSILXYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 301
MSI+ Y GG VVAM G +CV IA+D R G Q T++T+ KV ++ +YVGL G +D
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 302 QTVFXRLKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQPY 481
+TV ++ F NLYEL+ENR ++P+ S M+SNL Y+ RFG YF EP++AGL N+PY
Sbjct: 61 RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPY 119
Query: 482 VCNMDLIGCPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAADXDAI 661
+C MD IGC + P FV GT E L G+CE W N+KPDELF +Q++++ + DA
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAA 179
Query: 662 S 664
S
Sbjct: 180 S 180
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 45.2 bits (102), Expect = 4e-05
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 1/175 (0%)
Frame = +2
Query: 143 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXRL 322
G ++AM+ V + TD R + S K+ + + V G A DTQ +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 323 KFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGL-XPYDNQPYVCNMDL 499
K+ +++Y + EN+ + S + LY R ++AG Q Y
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIP--- 138
Query: 500 IGCPNEPEXFVVSGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAADXDAIS 664
IG + SG+ S + G ++ W PNL +E + QA+ A D S
Sbjct: 139 IGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSS 193
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 41.9 bits (94), Expect = 4e-04
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Frame = +2
Query: 143 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFXR 319
GG+ A+ G++ +A+D R + T + Q + + + G D +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 320 LKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQPYVCNMDL 499
L+ ++ Y M + +LS LY RRF PY+ ++AG+ + + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169
Query: 500 IGC 508
IGC
Sbjct: 170 IGC 172
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 41.9 bits (94), Expect = 4e-04
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Frame = +2
Query: 143 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFXR 319
GG+ A+ G++ +A+D R + T + Q + + + G D +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 320 LKFXMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQPYVCNMDL 499
L+ ++ Y M + +LS LY RRF PY+ ++AG+ + + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169
Query: 500 IGC 508
IGC
Sbjct: 170 IGC 172
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 40.3 bits (90), Expect = 0.001
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Frame = +2
Query: 179 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXRLKFXMNLYELKEN 358
+ +A D R S + K+ +G + + G A D Q + LYEL+E
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 359 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLXPYDNQ-PYVCNMDLIGCPNEPEXFVV 535
+ S +N LY R + ++AG YD + P + +D G + + V
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAG---YDKKGPQIFKVDSEGDRCQLKVCSV 199
Query: 536 SGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAADXDA 658
G+ S YG+ + ++P + DE +A+++A D+
Sbjct: 200 -GSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDS 239
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +2
Query: 143 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFXRL 322
G V ++G+DC+ I +K+ I A K+ + + + GL+ D + + R
Sbjct: 30 GSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRA 88
Query: 323 KFXMNLYEL 349
+ Y+L
Sbjct: 89 RIECQSYKL 97
>U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical
protein F58F12.1 protein.
Length = 163
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 527 FVVSGTCSEQLYGMCEALWEPNLKPDELFXTISQALVNAA 646
FV SGT S + G C+ L E LK +E+ + ++A ++AA
Sbjct: 91 FVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAA 130
>U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical
protein ZK742.3 protein.
Length = 447
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 158 AMKGQDCVAIATDKRFGIQAQTVSTN 235
AMK +AIA G+QAQT TN
Sbjct: 113 AMKSDGALAIAQTNHIGVQAQTAYTN 138
>AF016451-1|AAB66002.2| 294|Caenorhabditis elegans Serpentine
receptor, class x protein38 protein.
Length = 294
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 59 FELITLQ*FQVKKCLSFYITNMSILXYNGGAVVAMKG 169
F LITL FQ+ C ++Y Y+GGA+ ++ G
Sbjct: 132 FILITLF-FQILGCQNYYNAEYRAFQYSGGAICSLYG 167
>Z70211-1|CAA94157.2| 299|Caenorhabditis elegans Hypothetical
protein K11E4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 596 SSWAPRELHTYHTAVQNRCPI 534
+SW+ L+TY+T N CP+
Sbjct: 248 TSWSSVALNTYNTCASNMCPV 268
>AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical
protein Y47H9C.9 protein.
Length = 829
Score = 27.5 bits (58), Expect = 9.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 542 TCSEQLYGMCEALWEP 589
TCS+ ++G+C LW+P
Sbjct: 570 TCSKSVHGVCCGLWDP 585
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,109
Number of Sequences: 27780
Number of extensions: 321464
Number of successful extensions: 709
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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