Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H14
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 107 7e-24
03_04_0027 + 16593133-16593573 104 4e-23
02_01_0563 + 4134954-4135388 101 3e-22
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 30 1.3
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 6.8
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 6.8
04_04_0575 - 26342697-26342885,26343030-26343165,26343279-263437... 27 9.0
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 27 9.0
>07_03_1250 - 25183375-25183815
Length = 146
Score = 107 bits (256), Expect = 7e-24
Identities = 54/141 (38%), Positives = 77/141 (54%)
Frame = +1
Query: 37 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
M TS +K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 217 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQT 396
FH +NK + P +N+++LW++V + + A A GK P+ Q +V + P+
Sbjct: 61 FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEK 118
Query: 397 TCHSKSKVLLKISREXNQGCG 459
K+K++ K++ + + G
Sbjct: 119 PIVVKAKLISKVAEKKIKAAG 139
>03_04_0027 + 16593133-16593573
Length = 146
Score = 104 bits (250), Expect = 4e-23
Identities = 57/142 (40%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Frame = +1
Query: 37 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 217 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQV-ARQRQTPQ 393
FH N+ CP +N+++LW++V K A A GK PV Q +V + PQ
Sbjct: 61 FHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQ 117
Query: 394 TTCHSKSKVLLKISREXNQGCG 459
K+K++ K++ + + G
Sbjct: 118 RPIVVKAKLISKVAEKKIKAAG 139
>02_01_0563 + 4134954-4135388
Length = 144
Score = 101 bits (242), Expect = 3e-22
Identities = 55/142 (38%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Frame = +1
Query: 37 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 217 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQV-ARQRQTPQ 393
FH N+ CP +N+++LW++V + A A GK PV Q +V + P+
Sbjct: 61 FHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPE 115
Query: 394 TTCHSKSKVLLKISREXNQGCG 459
K+K++ K++ + + G
Sbjct: 116 RPIVVKAKLISKVAEKKIKAAG 137
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 325 KVPVHQYCQSWILQVARQRQTPQTTCHSKSKVLLKISREXNQGCGWC 465
K VH Y S ILQ QR + + V + I N+G WC
Sbjct: 433 KSTVHTYLDSAILQHQLQRLSEHNLLKATPSVFVVIQAIVNEGAVWC 479
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 163 FCDGAHHQHYHDLLDAYG 110
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 146 PPALPRPPGCLRCFPIRPCP 87
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
>04_04_0575 -
26342697-26342885,26343030-26343165,26343279-26343795,
26344286-26344381,26344933-26345011,26345329-26345712
Length = 466
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 423 KNFAFTMTGCLGSLPLPSNL*YPALTILMNGDLAIWSRCILQPRLFRD 280
K + +TG G PLPS++ P+ I + G A+W L+P + RD
Sbjct: 284 KQHPWMLTGS-GKPPLPSDVQVPSRVIALEGWGALWRG--LRPGMTRD 328
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -2
Query: 149 SPP-ALPRPPGCLRCFPIRPCP 87
SPP LP PPG C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,363,689
Number of Sequences: 37544
Number of extensions: 265877
Number of successful extensions: 766
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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