Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H14
(519 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 132 9e-31
BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 132 9e-31
AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 132 9e-31
BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 131 2e-30
AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 127 3e-29
BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 126 4e-29
AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a ... 40 0.007
AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligas... 31 1.8
AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligas... 31 1.8
AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligas... 31 1.8
AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligas... 31 1.8
AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein. 31 1.8
AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein. 31 1.8
AY766461-7|AAX07304.1| 68|Homo sapiens CC chemokine ligand 4L2... 29 7.4
AY766461-6|AAX07302.1| 103|Homo sapiens CC chemokine ligand 4L2... 29 7.4
AY766458-1|AAX07317.1| 103|Homo sapiens CC chemokine ligand 4L2... 29 7.4
AY766457-1|AAX07316.1| 68|Homo sapiens CC chemokine ligand 4L2... 29 7.4
AY358091-1|AAQ88458.1| 126|Homo sapiens VFLL3057 protein. 29 7.4
>U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 132 bits (318), Expect = 9e-31
Identities = 62/141 (43%), Positives = 84/141 (59%)
Frame = +1
Query: 37 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 217 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQT 396
+H ++N++FCP +NLDKLWTLVSEQTR+ A G P+ +S +V + + P+
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 397 TCHSKSKVLLKISREXNQGCG 459
K+K + + E + G
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141
Score = 34.7 bits (76), Expect = 0.20
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 329 SPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 481
+P I++V++ PKQPVIV VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 132 bits (318), Expect = 9e-31
Identities = 62/141 (43%), Positives = 84/141 (59%)
Frame = +1
Query: 37 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 217 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQT 396
+H ++N++FCP +NLDKLWTLVSEQTR+ A G P+ +S +V + + P+
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 397 TCHSKSKVLLKISREXNQGCG 459
K+K + + E + G
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141
Score = 34.7 bits (76), Expect = 0.20
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 329 SPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 481
+P I++V++ PKQPVIV VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A
protein.
Length = 148
Score = 132 bits (318), Expect = 9e-31
Identities = 62/141 (43%), Positives = 84/141 (59%)
Frame = +1
Query: 37 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 217 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQT 396
+H ++N++FCP +NLDKLWTLVSEQTR+ A G P+ +S +V + + P+
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 397 TCHSKSKVLLKISREXNQGCG 459
K+K + + E + G
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141
Score = 34.7 bits (76), Expect = 0.20
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 329 SPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 481
+P I++V++ PKQPVIV VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for
IMAGE:3543815) protein.
Length = 147
Score = 131 bits (316), Expect = 2e-30
Identities = 61/136 (44%), Positives = 82/136 (60%)
Frame = +1
Query: 52 KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 231
+KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM+++H ++
Sbjct: 5 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64
Query: 232 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTCHSK 411
N++FCP +NLDKLWTLVSEQTR+ A G P+ +S +V + + P+ K
Sbjct: 65 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVK 124
Query: 412 SKVLLKISREXNQGCG 459
+K + + E + G
Sbjct: 125 AKFFSRRAEEKIKSVG 140
Score = 34.7 bits (76), Expect = 0.20
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 329 SPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 481
+P I++V++ PKQPVIV VGGACVL A
Sbjct: 97 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 147
>AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a
protein.
Length = 106
Score = 127 bits (306), Expect = 3e-29
Identities = 55/100 (55%), Positives = 68/100 (68%)
Frame = +1
Query: 37 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 217 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPV 336
+H ++N++FCP +NLDKLWTLVSEQTR+ A G P+
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPI 100
>BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 126 bits (305), Expect = 4e-29
Identities = 60/141 (42%), Positives = 84/141 (59%)
Frame = +1
Query: 37 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 217 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQT 396
++ ++N++FCP +NLDKLWTLVSEQTR+ A G P+ +S +V + + +
Sbjct: 61 YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120
Query: 397 TCHSKSKVLLKISREXNQGCG 459
K+K+ + + E + G
Sbjct: 121 PVIVKAKLFSRRAEEKIKSVG 141
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 329 SPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 481
+P I++V++ KQPVIV VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLAKQPVIVKAKLFSRRAEEKIKSVGGACVLVA 148
>AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a
protein.
Length = 34
Score = 39.5 bits (88), Expect = 0.007
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 253 LNLDKLWTLVSEQTRLKYASAPDGKVPV 336
+NLDKLWTLVSEQTR+ A G P+
Sbjct: 1 VNLDKLWTLVSEQTRVNAAKNKTGAAPI 28
>AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligase E3
component n-recognin 4 protein.
Length = 5183
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 402 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 262
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligase
E3 component n-recognin 4 protein.
Length = 1672
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 402 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 262
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535
>AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligase E3
component n-recognin 4 protein.
Length = 5183
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 402 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 262
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligase
E3 component n-recognin 4 protein.
Length = 1672
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 402 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 262
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535
>AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein.
Length = 5183
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 402 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 262
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein.
Length = 1678
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 402 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 262
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 494 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 541
>AY766461-7|AAX07304.1| 68|Homo sapiens CC chemokine ligand 4L2bd2
protein.
Length = 68
Score = 29.5 bits (63), Expect = 7.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 322 GKVPVHQYCQSWILQVARQRQTPQT 396
GK P+HQ C +W + RQR+ P T
Sbjct: 43 GKDPIHQSCPTWTM--VRQRKMPTT 65
>AY766461-6|AAX07302.1| 103|Homo sapiens CC chemokine ligand 4L2f
protein.
Length = 103
Score = 29.5 bits (63), Expect = 7.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 322 GKVPVHQYCQSWILQVARQRQTPQT 396
GK P+HQ C +W + RQR+ P T
Sbjct: 78 GKDPIHQSCPTWTM--VRQRKMPTT 100
>AY766458-1|AAX07317.1| 103|Homo sapiens CC chemokine ligand 4L2f
protein.
Length = 103
Score = 29.5 bits (63), Expect = 7.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 322 GKVPVHQYCQSWILQVARQRQTPQT 396
GK P+HQ C +W + RQR+ P T
Sbjct: 78 GKDPIHQSCPTWTM--VRQRKMPTT 100
>AY766457-1|AAX07316.1| 68|Homo sapiens CC chemokine ligand 4L2bd2
protein.
Length = 68
Score = 29.5 bits (63), Expect = 7.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 322 GKVPVHQYCQSWILQVARQRQTPQT 396
GK P+HQ C +W + RQR+ P T
Sbjct: 43 GKDPIHQSCPTWTM--VRQRKMPTT 65
>AY358091-1|AAQ88458.1| 126|Homo sapiens VFLL3057 protein.
Length = 126
Score = 29.5 bits (63), Expect = 7.4
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -2
Query: 206 PSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP---*LT*PLSFLVF 54
P+LPK+PG ++ L W S P P G + + PCP PL FLV+
Sbjct: 55 PALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCPFRVQFEPPLQFLVW 104
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,203,591
Number of Sequences: 237096
Number of extensions: 1470416
Number of successful extensions: 3093
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3086
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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