Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H14
         (519 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.     111   4e-25
U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal prot...   111   4e-25
AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p pro...   111   4e-25
AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA...   111   4e-25
X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal prot...   110   1e-24
EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.    28   8.7  
EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.    28   8.7  

>U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.
          Length = 149

 Score =  111 bits (268), Expect = 4e-25
 Identities = 51/96 (53%), Positives = 58/96 (60%)
 Frame = +1

Query: 49  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 228
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 229 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPV 336
           +   F P +NLDKLW+LV  +   +       K PV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPV 101


>U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal protein
           RpL27a protein.
          Length = 149

 Score =  111 bits (268), Expect = 4e-25
 Identities = 51/96 (53%), Positives = 58/96 (60%)
 Frame = +1

Query: 49  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 228
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 229 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPV 336
           +   F P +NLDKLW+LV  +   +       K PV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPV 101


>AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p
           protein.
          Length = 149

 Score =  111 bits (268), Expect = 4e-25
 Identities = 51/96 (53%), Positives = 58/96 (60%)
 Frame = +1

Query: 49  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 228
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 229 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPV 336
           +   F P +NLDKLW+LV  +   +       K PV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPV 101


>AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA
           protein.
          Length = 149

 Score =  111 bits (268), Expect = 4e-25
 Identities = 51/96 (53%), Positives = 58/96 (60%)
 Frame = +1

Query: 49  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 228
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 229 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPV 336
           +   F P +NLDKLW+LV  +   +       K PV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPV 101


>X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal protein
           L27a protein.
          Length = 149

 Score =  110 bits (264), Expect = 1e-24
 Identities = 57/141 (40%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
 Frame = +1

Query: 49  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 228
           +KKTRKLRGHVS                 N GG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 229 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTCHS 408
           +   F P +NLDKLW+LV  +   +       K PV    +    ++  +   P      
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 409 KSKVLLKISRE-XNQGCGWCL 468
           K+K   K + +   +  G CL
Sbjct: 126 KAKYFSKKAEDKIKEAGGVCL 146



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 326 RSPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 481
           ++P I++VK            P +PVIV              + GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKEAGGVCLLSA 149


>EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 142 GGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 240
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


>EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 142 GGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 240
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,983,025
Number of Sequences: 53049
Number of extensions: 449986
Number of successful extensions: 1606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)