Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H14
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   117   4e-27
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    48   5e-06
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    27   8.0  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    27   8.0  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  117 bits (282), Expect = 4e-27
 Identities = 57/127 (44%), Positives = 77/127 (60%)
 Frame = +1

Query: 37  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 216
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 217 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQT 396
           FH  KN+++CP +N+++LW+LV ++ R K   A  GK PV    +    +V  +   P+T
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117

Query: 397 TCHSKSK 417
               K++
Sbjct: 118 PLIVKAR 124


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 24/70 (34%), Positives = 40/70 (57%)
 Frame = +1

Query: 208 MRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQT 387
           MR FH  KN+++CP +N+++LW+LV ++ R K   A  GK PV    +    +V  +   
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 388 PQTTCHSKSK 417
           P+T    K++
Sbjct: 58  PETPLIVKAR 67


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +1

Query: 10  FKTLTEH*TMATSK-KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMD---- 174
           FK++    +M ++K KK+ K  GH                   N GG   H + M+    
Sbjct: 116 FKSIRSKKSMKSTKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSE 175

Query: 175 -KYHPGYFGKLGMRNFHFRK 231
            ++ P  F KLG   F+F+K
Sbjct: 176 EEHEPSGFKKLGKSFFNFKK 195


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 143 PALPRPPGCLRCFPIRPCP 87
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +1

Query: 142 GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 273
           G E HH    D YHP  F      +L + N + F KNK +C     D+L+
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 258 VQNWTEILVLSKVEISHTKFAKVSR 184
           + NWT  L LSKV   H  F  ++R
Sbjct: 20  IANWTVFLFLSKVPSIHKSFGSLTR 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,279,315
Number of Sequences: 27780
Number of extensions: 225508
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)