Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H11
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 229 1e-60
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 215 3e-56
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 207 7e-54
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.80
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 29 3.2
01_05_0379 + 21630223-21631188 29 3.2
05_04_0070 + 17643945-17644002,17644173-17644775,17645376-176455... 28 5.6
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 9.9
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 9.9
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 229 bits (560), Expect = 1e-60
Identities = 100/126 (79%), Positives = 111/126 (88%)
Frame = +1
Query: 40 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 219
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 220 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 399
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 400 KPQGYC 417
KPQG C
Sbjct: 121 KPQGTC 126
Score = 88.6 bits (210), Expect = 4e-18
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +2
Query: 407 RATVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEFX 586
+ T RV IGQ ++SVR + EALRRAKFKFPGRQKI S KWGFTK+ R+E+
Sbjct: 123 QGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYV 182
Query: 587 KLREXGRLANDGCIVQYRPEHG 652
KL+ GR+ +DG Q HG
Sbjct: 183 KLKAEGRIMSDGVNAQLLGSHG 204
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 215 bits (524), Expect = 3e-56
Identities = 93/122 (76%), Positives = 105/122 (86%)
Frame = +1
Query: 52 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 231
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 232 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 411
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 412 YC 417
C
Sbjct: 432 TC 433
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/80 (53%), Positives = 54/80 (67%)
Frame = +2
Query: 413 TVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEFXKL 592
T RVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKL 491
Query: 593 REXGRLANDGCIVQYRPEHG 652
+ GR+ DG + HG
Sbjct: 492 KSEGRIVPDGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 207 bits (505), Expect = 7e-54
Identities = 90/119 (75%), Positives = 103/119 (86%)
Frame = +1
Query: 61 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 240
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 241 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGYC 417
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG C
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTC 122
Score = 85.0 bits (201), Expect = 5e-17
Identities = 40/72 (55%), Positives = 48/72 (66%)
Frame = +2
Query: 407 RATVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEFX 586
+ T RV IGQ ++SVR EALRRAKFKFPGRQKI S KWGFTK+ RDE+
Sbjct: 119 QGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYV 178
Query: 587 KLREXGRLANDG 622
+L+ GR+ DG
Sbjct: 179 RLKSEGRIMPDG 190
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 163 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 282
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -3
Query: 529 LTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANTXYSSPE 404
L+SGEL +G + D+ LPPV G G S+A S+P+
Sbjct: 134 LSSGELLIGASSPYDEPPLPPVHSRRG-AGRSSAVPRLSAPD 174
>01_05_0379 + 21630223-21631188
Length = 321
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 369 APDWDAWCVWQASGLLXHVFALDSPSCPCALVTGGRH 479
AP ++ WC W ASG+ H +P A+ GG H
Sbjct: 83 APPYN-WCPWDASGVRGHPRDPRNPIRCIAICVGGSH 118
>05_04_0070 +
17643945-17644002,17644173-17644775,17645376-17645579,
17646480-17647009
Length = 464
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 256 NKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGY 414
+KY++ + H + H+IR N+ L+ +G + L T + + G Q Y
Sbjct: 117 DKYVITGFEQGHTHAFVSPDKRHLIRSNRKLTLSGRNTLLTCHKASIGTSQAY 169
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 269 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 168
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 181 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 65
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,269,789
Number of Sequences: 37544
Number of extensions: 462304
Number of successful extensions: 1312
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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