Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H10
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    59   5e-10
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    27   3.1  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    26   5.4  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    26   5.4  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   7.2  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   9.5  

>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
 Frame = +3

Query: 447 LSFPRRPPWDFNMTAAQLDAQEHXYFKNY---IDKLQASEHWKDISYFEMNLETWRQLWR 617
           L+ PRRP WD   TA +LD  E   F N+   + +LQ  E +  ++ FE NLE WRQLWR
Sbjct: 108 LTIPRRPHWDQTTTAVELDRMERESFLNWRRNLAQLQDVEGFI-VTPFERNLEIWRQLWR 166

Query: 618 VLXMCDILLLI 650
           V+   D+++ I
Sbjct: 167 VIERSDVVVQI 177


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 282 PSRGRGGRDTNRYALKFYRETEDELKIKKEDALRALSPV 398
           P      R   R    F  ETE+ELK+KK D L  L  +
Sbjct: 416 PLASISSRKVVRMKYSFEPETENELKLKKGDLLLVLKEI 454


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 618 PSTTDAMSPDSFQNRKCPSNVPR 550
           PS+TD +SPDS +  K  S++P+
Sbjct: 159 PSSTDLLSPDSQKLSKSSSDLPQ 181


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 582 EMNLETWRQLWRVLXMCD 635
           EM + TWRQLW  L + +
Sbjct: 27  EMRINTWRQLWLNLAIAE 44


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 238 RQEQMHTMWSQSTTSRVVDAED 303
           +QE+ H +WS++   +VVD  D
Sbjct: 421 KQEEDHRLWSENVPKQVVDQID 442


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 72  VQRPSAEKLGIDFLLLSLTAYSSCPKHVG 158
           V  P+  KLG D   L++     C  HVG
Sbjct: 271 VSMPAGAKLGADIFWLTVKMLKICGSHVG 299


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 228 MPTSTGTNAYDVVSVNYQPSRGRGGRDTNRYALKFY 335
           +PT+T T    V+     PS G GG   +    KFY
Sbjct: 7   IPTATSTVYISVLPATATPSGGSGGNVLHEDLNKFY 42


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 504 AQEHXYFKNYIDKLQASEHWKDISYFEMNLET 599
           A    YFK+   KL  SEH  ++ +F    E+
Sbjct: 186 AARSSYFKSKFSKLGPSEHEIEVKHFAKEFES 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,200
Number of Sequences: 5004
Number of extensions: 43780
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)