Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H10
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702...    60   2e-09
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702...    58   8e-09
10_08_0843 - 20960249-20960446,20960583-20960987,20961092-209612...    27   9.8  

>03_05_0491 -
           24868261-24869383,24869482-24869561,24870193-24870249,
           24870567-24870660,24871013-24871099,24871188-24871347,
           24871440-24871674
          Length = 611

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = +3

Query: 447 LSFPRRPPWDFNMTAAQLDAQEHXYFKNYIDKLQASEHWKDI--SYFEMNLETWRQLWRV 620
           L  PRRPPW   MT  +LDA E   F  +   L   E  + +  + FE N++ WRQLWRV
Sbjct: 127 LKVPRRPPWTPQMTVEELDANEKRAFLEWRRNLARLEENEKLVLTPFEKNIDIWRQLWRV 186

Query: 621 LXMCDILLLI 650
           L   D+L+++
Sbjct: 187 LERSDLLVMV 196


>12_02_1133 -
           26368323-26369457,26369556-26369635,26370145-26370201,
           26370508-26370601,26371006-26371092,26371179-26371268,
           26371396-26371649
          Length = 598

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
 Frame = +3

Query: 447 LSFPRRPPWDFNMTAAQLDAQEHXYF---KNYIDKLQASEHWKDISYFEMNLETWRQLWR 617
           L  PRRPPW+  MT  +LD  E   F   +  + +L+ ++    ++ FE N++ WRQLWR
Sbjct: 110 LRVPRRPPWNSRMTVEELDENERRAFLVWRRNLARLEENDKLV-LTPFEKNIDIWRQLWR 168

Query: 618 VLXMCDILLLI 650
           VL   D+L+++
Sbjct: 169 VLERSDLLVMV 179


>10_08_0843 -
           20960249-20960446,20960583-20960987,20961092-20961232,
           20961324-20961471,20961742-20961863,20962372-20962412,
           20962671-20962839
          Length = 407

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 635 VTHX*NPPQLTPCLQIHFKIGNVLP 561
           VTH   PPQ  P + + F + NV P
Sbjct: 44  VTHVHVPPQTIPVMGVQFHVSNVSP 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,554,374
Number of Sequences: 37544
Number of extensions: 279621
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)