Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H10
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical ...    37   0.011
Z66524-9|CAA91422.3|  696|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z66524-8|CAH10782.1|  753|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z66523-11|CAA91417.3|  696|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z66523-10|CAH04723.1|  753|Caenorhabditis elegans Hypothetical p...    29   3.8  
AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.      28   6.6  
AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle defec...    28   6.6  

>AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical
           protein C53H9.2a protein.
          Length = 554

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = +3

Query: 447 LSFPRRPP---WDFNMTAAQLDAQEHXYFKNYIDKLQASEHWKDISYFEMNLETWRQLWR 617
           L  PRRP    W+      +L+ +    +++ + +LQ  +    ++ FE N + WR+LWR
Sbjct: 118 LRIPRRPAKELWENMEDLTKLENEAFLQWRSDLSELQEVDGLV-LTPFERNPDMWRELWR 176

Query: 618 VLXMCDILLLI 650
           V+   DI++ I
Sbjct: 177 VVEKSDIIVQI 187


>Z66524-9|CAA91422.3|  696|Caenorhabditis elegans Hypothetical
           protein T13H5.1a protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +3

Query: 453 FPRRPPWDFN-MTAAQLDAQEHXYFKN--YIDKLQASEHW---KDISYFEMNLETWRQLW 614
           +P   P+D+N +   ++D  E+ ++ N  Y++     + +   + +    MN E WR +W
Sbjct: 88  YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 147

Query: 615 RVLXMCDILL 644
            +   C ++L
Sbjct: 148 ELGSNCIVML 157


>Z66524-8|CAH10782.1|  753|Caenorhabditis elegans Hypothetical
           protein T13H5.1b protein.
          Length = 753

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +3

Query: 453 FPRRPPWDFN-MTAAQLDAQEHXYFKN--YIDKLQASEHW---KDISYFEMNLETWRQLW 614
           +P   P+D+N +   ++D  E+ ++ N  Y++     + +   + +    MN E WR +W
Sbjct: 145 YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 204

Query: 615 RVLXMCDILL 644
            +   C ++L
Sbjct: 205 ELGSNCIVML 214


>Z66523-11|CAA91417.3|  696|Caenorhabditis elegans Hypothetical
           protein T13H5.1a protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +3

Query: 453 FPRRPPWDFN-MTAAQLDAQEHXYFKN--YIDKLQASEHW---KDISYFEMNLETWRQLW 614
           +P   P+D+N +   ++D  E+ ++ N  Y++     + +   + +    MN E WR +W
Sbjct: 88  YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 147

Query: 615 RVLXMCDILL 644
            +   C ++L
Sbjct: 148 ELGSNCIVML 157


>Z66523-10|CAH04723.1|  753|Caenorhabditis elegans Hypothetical
           protein T13H5.1b protein.
          Length = 753

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +3

Query: 453 FPRRPPWDFN-MTAAQLDAQEHXYFKN--YIDKLQASEHW---KDISYFEMNLETWRQLW 614
           +P   P+D+N +   ++D  E+ ++ N  Y++     + +   + +    MN E WR +W
Sbjct: 145 YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 204

Query: 615 RVLXMCDILL 644
            +   C ++L
Sbjct: 205 ELGSNCIVML 214


>AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 336 RETEDELKIKKEDALRALSPVPXKEMEINSLDYFPVDLSFPRRPP 470
           RE + EL++KKE+  R  SP P +         F   +S  +  P
Sbjct: 398 RELKFELQLKKEEKTRMQSPTPTRTPRTQKRAMFRTPMSTAKMEP 442


>AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle
           defective protein 1 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 336 RETEDELKIKKEDALRALSPVPXKEMEINSLDYFPVDLSFPRRPP 470
           RE + EL++KKE+  R  SP P +         F   +S  +  P
Sbjct: 398 RELKFELQLKKEEKTRMQSPTPTRTPRTQKRAMFRTPMSTAKMEP 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,442,533
Number of Sequences: 27780
Number of extensions: 250688
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)