Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H10
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08410.1 68414.m00930 GTP-binding family protein contains Pfa...    60   9e-10
At2g27200.1 68415.m03269 GTP-binding family protein contains Pfa...    57   1e-08
At5g54370.1 68418.m06770 late embryogenesis abundant protein-rel...    28   6.2  
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p...    27   8.2  

>At1g08410.1 68414.m00930 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 589

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
 Frame = +3

Query: 447 LSFPRRPPWDFNMTAAQLDAQEHXYFKNYIDKLQASEHWKDI--SYFEMNLETWRQLWRV 620
           L  PRRPPW   M+  +LDA E   F N+   L + E  + +  + FE NL+ WRQLWRV
Sbjct: 105 LQVPRRPPWTPEMSVEELDANEKQAFLNWRRMLVSLEENEKLVLTPFEKNLDIWRQLWRV 164

Query: 621 LXMCDILLLI 650
           L   D+++++
Sbjct: 165 LERSDLIVMV 174


>At2g27200.1 68415.m03269 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 537

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = +3

Query: 405 KEMEINSLDYFPVDLSFPRRPPWDFNMTAAQLDAQEHXYFKNYIDKLQASEHWKDI--SY 578
           KE  +         L  PRRP W   M   +LDA E   F  +  KL + E  + +  + 
Sbjct: 91  KEQRMREEALHASSLQVPRRPHWTPKMNVEKLDANEKQAFLTWRRKLASLEENEKLVLTP 150

Query: 579 FEMNLETWRQLWRVLXMCDILLLI 650
           FE NL+ WRQLWRVL   D+++++
Sbjct: 151 FEKNLDIWRQLWRVLERSDLIVMV 174


>At5g54370.1 68418.m06770 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein (GI:1350543)[Picea
           glauca]
          Length = 337

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 477 FNMTAAQLDAQEHXYFKNYIDKLQASEHWKDISYFEMNLETW 602
           FN     L+A +   + N ID L+ S   +D+S  E  L TW
Sbjct: 146 FNSNKFSLEAAKTASWDNEIDHLKFSYDGQDLSVPEETLSTW 187


>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
           putative similar to AOP1 [Arabidopsis
           lyrata][GI:16118889]; contains Pfam profile PF03171:
           2OG-Fe(II) oxygenase superfamily domain
          Length = 317

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 390 SPVPXKEMEINSLDYFPVDLSFPRRPPWDFNMTAAQLDAQEHXYFKNYIDKL 545
           S  P   + +  +D+   +L  P  P WD      Q   Q++ YF+   D++
Sbjct: 3   SETPLLPLRLPVIDFSNKNLK-PGEPEWDLTRADVQKALQDYGYFEASFDRI 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,548,179
Number of Sequences: 28952
Number of extensions: 229826
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)