Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H08
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 395 ILLSGLLDVWAWSEINVRWRLRTVG 321
           +L++ L     W+++N+RW +   G
Sbjct: 69  LLITNLWLKLEWNDVNMRWNVSDYG 93



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 303 PEAAQVAHSPKPPAHINLRPSPNIQ 377
           P A Q+ H+P    H    P P ++
Sbjct: 454 PAAIQIGHTPHHHPHPPETPGPQVE 478


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 636 EDKPKKHVLLSLKVTQQHMLYIAHE 562
           E  P+  VL + ++T     Y+AHE
Sbjct: 323 ERNPRSAVLAAREITSSSCSYMAHE 347


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 135 AVKAGGMRITQHKTPHSKDSKEPANEDLTGLS 230
           A  AG + I   + P   D++EP ++ L+G+S
Sbjct: 492 ACTAGTLGII-FQAPSLYDTREPVDQQLSGIS 522


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 177 PHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAP 278
           P S  +  P   +++ +SG  P+P+ P S+   P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMP 443


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 451 LTFXISLLCINLLVIKC-AAFYFLGCWMFGLGL 356
           ++  ++ L + +LV+    A+  LG W+FG+ L
Sbjct: 76  VSLAVADLAVAILVMPFNVAYLLLGKWIFGIHL 108


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 451 LTFXISLLCINLLVIKC-AAFYFLGCWMFGLGL 356
           ++  ++ L + +LV+    A+  LG W+FG+ L
Sbjct: 76  VSLAVADLAVAILVMPFNVAYLLLGKWIFGIHL 108


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 451 LTFXISLLCINLLVIKC-AAFYFLGCWMFGLGL 356
           ++  ++ L + +LV+    A+  LG W+FG+ L
Sbjct: 76  VSLAVADLAVAILVMPFNVAYLLLGKWIFGIHL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,364
Number of Sequences: 438
Number of extensions: 3462
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)