Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H07
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 50 3e-07
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po... 29 0.73
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 28 1.3
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 2.9
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 26 5.1
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 5.1
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 6.8
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 9.0
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 50.0 bits (114), Expect = 3e-07
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +3
Query: 288 DAVLEMQGTDLTVTYLQKNGFTTPLLFKEKTGLGLRVPTSNFTVNDVRMCVGSRRILDVM 467
D M + +Y + GF P +F R ++ + +G L ++
Sbjct: 149 DGFRRMPAESVNFSYFRDTGFNEPTIFPSSDTQNTR----QLNLSKIATLIGYDCPLALV 204
Query: 468 DVNTXKNIX--MTMXDWQRYYD-DPNKE-RLLNVISLEFSHTRLENYVQAPRIVR 620
DV T K I M M W +Y +P+K R+ +V+SLE S T+L YV+ P IVR
Sbjct: 205 DVVTQKQIPNKMDMESWVKYMSLEPSKRGRIYDVLSLEVSTTKLAYYVRKPNIVR 259
>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 28.7 bits (61), Expect = 0.73
Identities = 29/101 (28%), Positives = 40/101 (39%)
Frame = -2
Query: 320 EIGALHLQDCVGVLESLTLQLIGE*KPPAALRLIIAERPLVGVKLPVLAFTQLSWYLFFI 141
E+G + VG L L L I AL II +V + LP++ F LSW+
Sbjct: 4 ELGE-RISTSVGFLAELFLMKIPLFTVIVALLTIILG--IVNIFLPIVDFFGLSWHNLIN 60
Query: 140 IRQCFRHVYISQKHCTTKFTLFYVNILARSSEKK*RKSTIC 18
IR + Y H F L + I + R T+C
Sbjct: 61 IRLHTLNTYPLVHHGVISFILGLLGIFLLMPRFERRYGTLC 101
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 138 SAVFPTCLYKSETLHNQIYTILRKYFSSEQREKVTQIHHLXIHD 7
S + PT LY SE L N K + + + + HH +HD
Sbjct: 87 SNLLPTYLYNSEDLSNDTENNETKSINGKSALDLKEPHHSELHD 130
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 152 LFFIIRQCFRHVYISQKHCTTKFTLF 75
LFF+++QC++ S CT + T++
Sbjct: 1368 LFFLMQQCYQRKTFSFVDCTRQITIY 1393
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 323 CHILAEEWFYNSLAVQRENWSWIESTDE 406
C+ L+ E N + RE W+ TDE
Sbjct: 452 CNYLSAEQLSNVAEILREEMPWLRDTDE 479
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 221 IIAERPLVGVKLPVLAFTQLSWYLFFIIRQCFRHVYISQKHCTTK 87
I+A R L+ + + +QLS Y FF F + HC T+
Sbjct: 564 ILAARHLISLVHLLQNHSQLSCYSFFDYNYTFSSALVVLLHCVTE 608
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 451 RREPTHMRTSFTVKLLVGTLNPRPVFSLNSKGVVKPFFCK 332
+ +PT ++ V ++ PR V+ + G + PF CK
Sbjct: 2044 KTQPTLLKFEDEVDIMNSLQKPRKVYVRGTDGNLYPFLCK 2083
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 111 YINMSET-LPNNKKQVPRQL---RERKHRKLYSDEWALGDDEAEGGRGFSLADKLES 269
Y+N+ T L + Q+ R+L RE++H+K S + + +++ + R S ES
Sbjct: 573 YLNVKNTELVSLNNQLERELAYLREQQHKKRTSSSFGIFNNDKKSNRTISTPSPRES 629
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 117 LYKSETLHNQIYTILRKYFSSEQREK 40
L + N + TI+RK F E+RE+
Sbjct: 88 LQERRAFENVVRTIIRKRFEDEERER 113
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 599 HVVLEASVRKLQRDYVQETLFVRIVIVTLPIXHGHXDIFXC 477
H+V+E+ R Q YVQ+ + R IV + H H ++ C
Sbjct: 484 HLVVES--RSHQHAYVQDEIRHRGDIVWSVLSHPHGKVYLC 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,921
Number of Sequences: 5004
Number of extensions: 44393
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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