Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H07
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0332 - 16843295-16843356,16843884-16846656 31 0.75
09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852 31 0.99
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339... 29 3.0
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128 29 3.0
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 29 3.0
04_04_1492 - 33974804-33975040,33975121-33975214,33975351-339757... 29 4.0
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 28 7.0
06_01_1013 - 7931756-7935109 28 7.0
04_04_1022 + 30195703-30195753,30195925-30195987,30197535-301978... 27 9.2
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 27 9.2
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 31.1 bits (67), Expect = 0.75
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 318 LTVTYLQKNGFTTPLLFKEKTGL-GLRVPTSNFTVNDVRMCVGSRRILDVMDVNTXKNIX 494
LT Y G T PL K T L +R+ ++FT D+ G RIL +DV+ K
Sbjct: 561 LTANYNNFTG-TLPLCLKNCTALYRVRLEENHFT-GDISEAFGVHRILQYLDVSGNKLTG 618
Query: 495 MTMXDW 512
DW
Sbjct: 619 ELSSDW 624
>09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852
Length = 506
Score = 30.7 bits (66), Expect = 0.99
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Frame = +3
Query: 144 KKQVPRQLRERKHRKLYSDEWALGDDEAEGGRGFSLAD--KLESQRFEHTDAVLEMQGTD 317
K +VP LR R + + DDE E +G+ D KL++Q + LE+QG
Sbjct: 221 KYKVPDDLRLRYINHVEIKFRRMPDDEEEPPKGYISEDYNKLKAQALQD----LELQGFS 276
Query: 318 LTVTYLQKNGFTTPLLFKEKTGLGLRVPTSNFTVNDV-RMCVGSRRILD 461
+TYL +G+ + +E+ +VP N V + + G+ RILD
Sbjct: 277 SVMTYLSTSGWVS----QEQHCNDYKVP-DNLRVKFITAVFKGNSRILD 320
>12_02_1015 +
25331667-25332169,25333305-25333406,25333775-25333919,
25334002-25334186,25334297-25334401,25334507-25334604,
25334686-25334924,25335030-25335123,25335190-25335275,
25335579-25335677,25335804-25335869
Length = 573
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = -2
Query: 485 FXCVDIHYVENTARTDAHAHIVHGEITRRYSQSKTSFLFEQQGSCKTILLQVCDSEIGAL 306
F C ++ Y+E + A + E+TR S+ ++ + + G L + S + L
Sbjct: 180 FSCPNLQYLEISMVGSAANRMTGDELTRFVSEKRSLSVLKLDGCSNLNFLNISSSSLSTL 239
Query: 305 HLQDCVGVLESL 270
L D + +S+
Sbjct: 240 WLSDLSSLSKSV 251
>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
Length = 1226
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 461 RNGCQHTXKYRXDHEXLAALL*RSEQRASLERNLSGVFAHSPRELRASSXY 613
+N C+ DH L +LL R+E A LE L + + P++L++ Y
Sbjct: 1025 KNNCKELCSAIADHGRLQSLLLRAEGNAGLEGCLDNM-SQPPKDLKSLQLY 1074
>02_05_1142 - 34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +3
Query: 153 VPRQLRERKHRKLYSDEWALGDDEAE-----GGRGFSLADKLESQRFEHTDAVLEM--QG 311
VP+ L++ R++ + EW G++ + G +A+ E Q+ E T +L++ +G
Sbjct: 803 VPKVLKQLTRRRVLTMEWVSGENPTDLLSLSKGISSEIAESSEKQKIEATARLLDLVNKG 862
Query: 312 TDLTVTYLQKNG 347
+ ++ L + G
Sbjct: 863 VEASLVQLLETG 874
>04_04_1492 -
33974804-33975040,33975121-33975214,33975351-33975754,
33975855-33976747,33977014-33977167
Length = 593
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 308 RHRSHCHILAEEWFYNSLAVQRENWSWIESTD 403
R H H+ A + FY++ +R W+W+ +D
Sbjct: 304 RRIDHGHLYASKTFYDAGKKRRVLWAWVNESD 335
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 244 FHSPISWRVKDSSTPTQSWRCK 309
FHS IS+ KD P +W+ K
Sbjct: 439 FHSEISFETKDKGAPKLAWKIK 460
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 280 STPTQSWRCKAPISLSHTCRRMVLQLPC 363
S+P RC+ P++++ +C R+ +PC
Sbjct: 705 SSPCPDLRCEFPMTIACSCGRITATVPC 732
>04_04_1022 +
30195703-30195753,30195925-30195987,30197535-30197843,
30197934-30199292
Length = 593
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 DVSCIXKWWICVTFSRCSELKYLRKIV*IWLCSV 103
DV+ W IC T ++ ELK L +++ IW S+
Sbjct: 342 DVAADASWRIC-TVTQVEELKILLRLLPIWATSI 374
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 250 SPISWRVKDSSTPTQSWRCKAPIS 321
S +SW KDS T +WR K ++
Sbjct: 243 SMVSWVTKDSDTSAMAWRSKKSLA 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,253
Number of Sequences: 37544
Number of extensions: 288360
Number of successful extensions: 871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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