Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H07
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   7e-24
SB_52912| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14
SB_34302| Best HMM Match : Ribosomal_S10 (HMM E-Value=7.8)             31   1.0  
SB_242| Best HMM Match : AFP (HMM E-Value=0.45)                        31   1.0  
SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)                  30   1.3  
SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53)                       30   1.8  
SB_17790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)                    28   5.4  
SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)            28   5.4  
SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)                28   7.1  
SB_48248| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)                27   9.4  
SB_47203| Best HMM Match : SASP_gamma (HMM E-Value=5.1)                27   9.4  
SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score =  107 bits (257), Expect = 7e-24
 Identities = 53/121 (43%), Positives = 78/121 (64%), Gaps = 1/121 (0%)
 Frame = +3

Query: 261 LESQRF-EHTDAVLEMQGTDLTVTYLQKNGFTTPLLFKEKTGLGLRVPTSNFTVNDVRMC 437
           L++++F    ++V+E+ G DLTV Y ++NGF  PLL  +  GL + VP   F + DV   
Sbjct: 204 LKTKKFGSPKESVIEVHGRDLTVDYFERNGFQKPLLIDKTDGLNIVVPKPGFDIPDVEKY 263

Query: 438 VGSRRILDVMDVNTXKNIXMTMXDWQRYYDDPNKERLLNVISLEFSHTRLENYVQAPRIV 617
           VGS R LDV+DV   ++I M M +W  YY +P +++ LNVISLEFS+T + + V  P IV
Sbjct: 264 VGSMRELDVIDVCKQEDIKMRMREWTEYYMNPVRKKTLNVISLEFSNTPMSSLVHVPAIV 323

Query: 618 R 620
           +
Sbjct: 324 K 324


>SB_52912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 29/60 (48%), Positives = 50/60 (83%)
 Frame = +3

Query: 441 GSRRILDVMDVNTXKNIXMTMXDWQRYYDDPNKERLLNVISLEFSHTRLENYVQAPRIVR 620
           G+RR++DV+DVNT + + +T+ +W +Y+ +P +E++ NVISLEFSHT+L++ V++P +VR
Sbjct: 55  GARRLVDVIDVNTQQPLELTLQNWVKYFTNPEREKIYNVISLEFSHTKLQDLVESPLVVR 114



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 216 DDEAEGGRGFSLADKLESQRFEHTDAVLEM 305
           DDE EG R FSL +KL +  FE  D+ ++M
Sbjct: 22  DDEIEGKRTFSLEEKLANPVFE-ADSFVQM 50


>SB_34302| Best HMM Match : Ribosomal_S10 (HMM E-Value=7.8)
          Length = 220

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 357 PLLFKEKTGLGLRVPTSNFTVNDVRMCVGSRRILDV 464
           P   K+K   G+R+P  +  V DVR+ VG   + DV
Sbjct: 9   PCFSKQKARHGVRLPVGDDVVTDVRLSVGDDVVTDV 44


>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
          Length = 147

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 178 STGSFTPTXXXXXXXXXXXXXXFHSPISWRVKDSSTPTQSWRCKAPISLSHTC 336
           ST S+T T              + S  S+R   S TPT S+ C    + S+TC
Sbjct: 58  STTSYTSTTSYTSTTSYTSTTSYTSTTSYRSTPSYTPTPSYTC----TTSYTC 106


>SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 426 VRMCVGSRRILDVMDVNTXKNIXMTMXDWQRYYDDPNKERLLNVISLEFSHTRLEN 593
           +++C G+R   D+   N+ KNI   +     +Y      +  +V+ + FSH   EN
Sbjct: 28  LKICHGNRSDYDMSAKNSTKNIQRAVTQGINFYRLIQASKQASVLVIVFSHALTEN 83


>SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53)
          Length = 327

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 374 LFEQQGSCKTILLQVCDSEIGALHLQDCV 288
           +F+Q  +C T+ +QVCD  + +L +Q CV
Sbjct: 112 MFKQ--NCPTLSIQVCDMSLNSLRVQRCV 138


>SB_17790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/54 (25%), Positives = 31/54 (57%)
 Frame = +3

Query: 138 NNKKQVPRQLRERKHRKLYSDEWALGDDEAEGGRGFSLADKLESQRFEHTDAVL 299
           +++K+    L +   ++LY D   L  DE++G   + L+D   ++ FE++D ++
Sbjct: 227 DDEKEAKNILGQMLPKQLYCDIKELFSDESQGFIQYHLSDGCINENFEYSDTLI 280


>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 396  VPTSNFTVNDVRMCVGSRRILDVMDVNTXKNIXMTMXDWQRYYDDPNKE 542
            V T N T++DV++ V   R LD+   N  +N+     D  R+   P+ E
Sbjct: 941  VGTQNLTISDVKLLVNIVRGLDIPVRNNARNVRSAPRD-SRFGGGPSTE 988


>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
          Length = 606

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
 Frame = +3

Query: 291 AVLEMQGTDLTVTYLQKNGFTTPLLFKEKTGLGLRVPTSNFTVNDVRMCVGSRRI-LDVM 467
           AV  +Q TDL+ TY    GF  PL+    T       + +F +N  R   G R + + + 
Sbjct: 221 AVTYIQQTDLSWTYGYTLGFGIPLVSLTITAAAFLCSSKHFVINRPR-GTGLRNVRMIIK 279

Query: 468 DVNTXKNIXMTMXDWQRYYDDPNKERLLNVISLEFSHTRLENYV 599
              + +N  +   ++   +   +K   L+  S+++  T L + V
Sbjct: 280 QAWSKRNDTVETREFTSLHKAKSKMTWLDRASVQYGGTFLNSEV 323


>SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)
          Length = 231

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 458 ENTARTDAHAHIVHGEITRRYSQSKTSFLFEQQGSCKTILLQVCDSEIGALHL---QDCV 288
           EN  R D    ++HG  T  YS S  SF+FE     K I+       IG L     ++ +
Sbjct: 15  ENYMRFDGFV-VLHGSDTMSYSASALSFMFENLS--KPIIFTGSQLPIGDLRTDAKENLI 71

Query: 287 GVLESLTLQLIGE 249
             ++  +LQ  GE
Sbjct: 72  TAIQIASLQEKGE 84


>SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)
          Length = 468

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +3

Query: 129 TLPNNKKQVPRQLRERKHRKLYSDEWALGD--DEAEGGRGFSLADKLESQRFEH-TDAVL 299
           T+ +NK QVP+    +K RK +++   +G+  +    G G  +   L  + + H  D   
Sbjct: 331 TVQSNKGQVPKDTTRKKTRKPFANH-RIGERMNNKHEGIGLKIITPLLHELYSHLQDGWN 389

Query: 300 EMQGTDLTVTYLQKNGFTTPLLFKEKT 380
           ++      V Y+ KN F   L  + +T
Sbjct: 390 QVPDAASLVNYMTKN-FKQGLQIRHRT 415


>SB_48248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 585 GECAKTPERLRSRDALCSDRHSNAANXSWSXRYFXVC*H 469
           G  +K PER R   A  ++ HSN     W+      C H
Sbjct: 105 GTASKVPERAREEQASPTNEHSNRWIKPWTDSIADECPH 143


>SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
          Length = 229

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/85 (18%), Positives = 35/85 (41%)
 Frame = -2

Query: 404 RRYSQSKTSFLFEQQGSCKTILLQVCDSEIGALHLQDCVGVLESLTLQLIGE*KPPAALR 225
           RR       ++ +   +C     + C S + AL  + C   + +L  + +    PP   R
Sbjct: 145 RRVLSLSPPYMQDVYFTCHRPTCKTCTSPVTALTCKTCTSPVTALHARRVLHLSPPLHAR 204

Query: 224 LIIAERPLVGVKLPVLAFTQLSWYL 150
            +++  P    +  ++  TQ+  Y+
Sbjct: 205 RVLSLSPPSHARRAIILKTQIYMYI 229


>SB_47203| Best HMM Match : SASP_gamma (HMM E-Value=5.1)
          Length = 225

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 126 PT-CLYKSETLHNQIYTILRKYFSSEQREKVTQIH 25
           PT C YK+  +  Q+ ++ RKY     RE   QIH
Sbjct: 190 PTKCAYKANKVRLQLSSLFRKYTYKYTREIHVQIH 224


>SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 244 FHSPISWRVKDSSTPTQSWRCKAPISLSHTCRRMVLQ 354
           + SP+S    +SS+P  S   K  IS S +C+ + +Q
Sbjct: 87  YSSPVSPSRSNSSSPRMSRSAKRGISKSKSCQTLTIQ 123


>SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 425 IVHGEITRRYSQSKTSFLFEQQGSCKTILLQVCDSEIGALHLQD 294
           I+HG  T  Y+ S  SF+FE  G  K+++     S I   HL D
Sbjct: 193 ILHGTDTLPYTASALSFMFENLG--KSVIFTGSQSPINE-HLND 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,686,822
Number of Sequences: 59808
Number of extensions: 368595
Number of successful extensions: 1148
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)