Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H07
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.3  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 256 ISWRVKDSSTPTQSWRCKAPI-SLSHTCRRMVLQ 354
           I  R KDSS+  + W  +A I  L+   R + LQ
Sbjct: 332 IRTRYKDSSSSVEGWENRATIPELNEEFRDLRLQ 365


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/54 (22%), Positives = 23/54 (42%)
 Frame = -2

Query: 566  QRDYVQETLFVRIVIVTLPIXHGHXDIFXCVDIHYVENTARTDAHAHIVHGEIT 405
            ++ YVQ+ +      +   + +     + C D    E+  +T  H    HGE+T
Sbjct: 1043 KKTYVQDLIQAEASQIYDMLVYEGGHFYVCGDCTMAEDVYQTLKHIIQTHGEMT 1096


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 451 RREPTHMRTSFTVKLLVGTLN 389
           RRE    RT+FT + LV   N
Sbjct: 5   RREARRARTAFTYEQLVALEN 25


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 381 GLGLRVPTSNFTVNDVRMCVG 443
           G  L  P  N++ NDV+ C G
Sbjct: 99  GNPLIAPYPNWSYNDVKYCDG 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,805
Number of Sequences: 438
Number of extensions: 3122
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)