Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H06
(493 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 189 9e-49
SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30) 31 0.68
SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81) 28 4.8
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18) 28 4.8
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 27 6.4
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003) 27 6.4
SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16) 27 6.4
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91) 27 8.4
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 189 bits (461), Expect = 9e-49
Identities = 89/134 (66%), Positives = 105/134 (78%), Gaps = 2/134 (1%)
Frame = +3
Query: 45 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 224
MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK
Sbjct: 1 MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60
Query: 225 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKKLRFNTRVRFEX 398
+ KRSK+KPFVKV NYNHLMPTRY+VD +K KD+ +DPA +KK + E
Sbjct: 61 RTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKKALREVKSTLEE 120
Query: 399 RYKSGKNKWFFQKL 440
RYKSGKNKWFFQKL
Sbjct: 121 RYKSGKNKWFFQKL 134
>SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)
Length = 289
Score = 30.7 bits (66), Expect = 0.68
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 122 QELRRRYLRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDANTLY 301
+E R+ L A R FR Y + PE GK P+ + +R GCK + N LY
Sbjct: 171 RETSRKELEYASR--FRPAYARYAPELGCRTGKNQEPKRITRVQWRFGCKFPNPVTNELY 228
Query: 302 S 304
+
Sbjct: 229 A 229
>SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 267 QPSRKALSWTSCGFYSFPSSCALSGGTCRY-QRRKHARTAC 148
QP + A S GFYS+ + C C Y ++ H ++ C
Sbjct: 97 QPVKPARSNNCGGFYSYTTECPAKEKICNYCKKPNHFKSVC 137
>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 282 SDYSLQPSRKALSWTSCG 229
S Y ++P K+L W SCG
Sbjct: 2 SSYRIKPKNKSLGWVSCG 19
>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
Length = 245
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 391 KRTRVLKRSFLRFAGSFRSFALNFSKL 311
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125
>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 330 AKDL--KDPAKRKKLRFNTRVRFEXRYKSGKNKWFFQKLRF 446
+KDL + P +K FN + E R++ G K F+++LRF
Sbjct: 2 SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 391 KRTRVLKRSFLRFAGSFRSFALNFSKL 311
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623
>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
Length = 366
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 391 KRTRVLKRSFLRFAGSFRSFALNFSKL 311
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVKNFSKV 86
>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 132 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYN 278
D+ D Y + AG+ + + HK+ G K + KP +K VN N
Sbjct: 198 DDDIDDDEYHPGYSAGLKKRLKAAHKQRGYTKAFAKRGTKP-MKEVNSN 245
>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -1
Query: 187 LSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLKTSTTLPGFIILPILEGY 32
+S+ A+ + PY +P+S FL ++ P Y+PL P + L Y
Sbjct: 13 VSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFLQAPPSY 66
>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 391 KRTRVLKRSFLRFAGSFRSFALNFSKL 311
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVENFSKV 86
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 27.5 bits (58), Expect = 6.4
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 180 IDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMP-TRYTVDFSFEKFSAKDLKDPAK 356
I Y KVH K + + ++K+ PF K N ++P + V +FEK++A + +K
Sbjct: 1083 IKMYMEKVHYYKAKVETYYKTKVMPFYK----NKVVPFYKNKVIPAFEKYTAL-ADELSK 1137
Query: 357 RKKLRFNTRVRFEXRYK 407
LR T + YK
Sbjct: 1138 NMTLRAKTYILNSRPYK 1154
>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
Length = 1205
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 391 KRTRVLKRSFLRFAGSFRSFALNFSKL 311
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702
>SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)
Length = 105
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 30 EYPS-KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 134
++P+ ++GK K G V V+ GRY G ++V+ D
Sbjct: 58 DFPAHELGKHFKMGDHVKVIGGRYEGDTGLIVRVED 93
>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 159 GHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 338
GH F++ ID++ RK HK +KI R+ IK ++Y+ + T+ +D ++ A
Sbjct: 99 GHRFLSLIDKHFRKDHK---LSKIFNRNTIK-----ISYSCMSNTKQIIDSHSKRIIASS 150
Query: 339 L 341
+
Sbjct: 151 I 151
>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
Length = 383
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 318 EKFSAKDLKDPAKRKKLRFNTRVRFEXR---YKSGKNKWFFQKLR 443
++ S D +D +KRK++RF FE YK+ FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,899
Number of Sequences: 59808
Number of extensions: 298202
Number of successful extensions: 869
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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