Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H06
(493 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 191 2e-49
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 191 2e-49
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.4
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 1.4
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 1.4
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 1.4
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 29 1.8
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 29 1.8
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 29 1.8
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 28 4.2
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical pr... 27 9.8
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 9.8
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 9.8
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 9.8
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 191 bits (466), Expect = 2e-49
Identities = 88/136 (64%), Positives = 108/136 (79%), Gaps = 2/136 (1%)
Frame = +3
Query: 45 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 224
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 225 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEX 398
KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K + +FE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 399 RYKSGKNKWFFQKLRF 446
RYK+GKNKWFF KLRF
Sbjct: 121 RYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 191 bits (466), Expect = 2e-49
Identities = 88/136 (64%), Positives = 108/136 (79%), Gaps = 2/136 (1%)
Frame = +3
Query: 45 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 224
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 225 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEX 398
KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K + +FE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 399 RYKSGKNKWFFQKLRF 446
RYK+GKNKWFF KLRF
Sbjct: 121 RYKTGKNKWFFTKLRF 136
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 51 KIMKPGKVVLVLSGRYAGRKAIVVK 125
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 174 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 323
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 174 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 323
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 174 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 323
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 29.1 bits (62), Expect = 1.8
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 144 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 305
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 306 --DFS-FEKFSAKDLKDP 350
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 29.1 bits (62), Expect = 1.8
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 144 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 305
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 306 --DFS-FEKFSAKDLKDP 350
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 29.1 bits (62), Expect = 1.8
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 144 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 305
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 395
Query: 306 --DFS-FEKFSAKDLKDP 350
D S F+ F +DL P
Sbjct: 396 IDDTSNFDDFPDEDLTWP 413
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 111 PCDPRTGHLRPALLYPASLSYPSWRDIPFTR*HRKNS 1
P D TGH RPAL P PS + +P + H S
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS-QSVPKAQAHGAKS 585
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 27.9 bits (59), Expect = 4.2
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 144 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 305
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 344
Query: 306 --DFS-FEKFSAKDLKDP 350
D S F+ F +DL P
Sbjct: 345 IDDTSNFDDFPDEDLTWP 362
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 174 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 323
AG++R V + N+ KR KI + YNHL+P T+D+S K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
protein F20B10.1 protein.
Length = 1180
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 285 SSDYSLQPSRKALSWTSCGFYSFPSSCALSGGTCRYQR 172
SS YS + + L W YS SCA++ G+C + R
Sbjct: 607 SSWYSTRSDKHGLQWGEAPPYSRMCSCAIN-GSCLHNR 643
>Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical
protein F45E6.4 protein.
Length = 333
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -2
Query: 291 LASSDYSLQPSRKALSWTSCGFYS--FPSSC 205
LAS++Y + P + A ++ +CG + FP +C
Sbjct: 195 LASANYGMCPCQHAFAFPACGMETGFFPGTC 225
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 394 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 299
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 394 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 299
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 394 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 299
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,731,044
Number of Sequences: 27780
Number of extensions: 213365
Number of successful extensions: 734
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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